Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq5 111 1e-19 >seq5 Length=1237164 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| ||||||||||| || |||||||| ||||| ||||| || || || Sbjct 1116648 CCACCACGCAGACGGAGCACCAAATGCAGTGTGGATTCCTTTTGGATGTTGTAGTCGGCG 1116707 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || ||| || || | |||||||| ||| | |||| | ||||| || || ||| Sbjct 1116708 AGAGTACGACCCTCCTCCAACTGTTTGCCTGCAAAAATCAGCCGCTGCTGGTCTGGGGGA 1116767 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| |||||||| | || || || | || | |||||| | ||||| Sbjct 1116768 ATACCCTCCTTGTCTTGGATCTTCGCCTTTACGTTATCAATAGTGTCGCTAGCCTCTACC 1116827 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTT 29788 || || | ||| || || || |||| || || || || |||||||||| Sbjct 1116828 TCGAGCGCTATTGTCTTCCCTGTTAGTGTCTTCACGAAGATCTGCATTT 1116876 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||||||||| || |||||||| ||||| ||||| || || || | || ||| Sbjct 1116432 CGAAGCACCAAATGCAGTGTGGATTCCTTTTGGATGTTGTAGTCGGCGAGAGTACGACCC 1116491 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | |||||||| ||| | |||| | ||||| || || ||||||||||| ||| Sbjct 1116492 TCTTCCAACTGTTTGCCTGCAAAAATCAGCCGCTGCTGGTCTGGGGGAATACCCTCCTTG 1116551 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || || || | || | |||||| | ||||| ||||| | ||| Sbjct 1116552 TCTTGGATCTTCGCCTTTACGTTATCAATAGTGTCGCTAGCCTCTACCTCAAGCGCTATT 1116611 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || |||| || || || || |||||||| Sbjct 1116612 GTCTTCCCTGTTAGCGTCTTCACGAAGATCTGCAT 1116646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385218805631844