Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq7 140 6e-28 seq14 123 5e-23 >seq7 Length=1072466 Score = 140 bits (154), Expect = 6e-28 Identities = 175/239 (73%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 82576 ATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTAT 82635 |||||| || || | || ||| || || || ||||| || ||||| ||||| ||||| | Sbjct 364038 ATCACC--CCCCCGCGCAGACGGAGGACCAAATGCAGGGTGGATTCCTTCTGGATATTGT 364095 Query 82636 AATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGAT 82695 |||| | || | | || || || | || || || || || || || | ||||| | Sbjct 364096 AATCGGCGAGCGTGCGTCCCTCCTCCAACTGCTTGCCCGCGAAAATCAGGCGCTGTTGGT 364155 Query 82696 CTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAG 82755 | ||||| || |||||||| || |||||||| || || ||||| ||||||||||| | | Sbjct 364156 CAGGAGGGATGCCTTCCTTGTCCTGAATCTTCGCCTTCACATTGTCAATCGTATCGCTGG 364215 Query 82756 GTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 || || || | | ||||||||||| ||||||||||| || || ||||||||| || Sbjct 364216 CCTCGACCTCGAGCGCGATCGTCTTGCCCGTCAACGTCTTCACGAAAATCTGCATTTTT 364274 >seq14 Length=332912 Score = 123 bits (136), Expect = 5e-23 Identities = 173/242 (71%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 82576 ATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTAT 82635 |||||| || || | || ||| || || || ||||| || ||||| ||||| || || | Sbjct 28310 ATCACC--CCGCCACGCAGACGGAGGACCAAATGCAGGGTGGATTCCTTCTGGATGTTGT 28253 Query 82636 AATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGAT 82695 |||| | || | | || || || | ||||| || || || || || | ||| || | Sbjct 28252 AATCGGCGAGCGTGCGGCCCTCCTCCAACTGTTTGCCCGCGAAAATCAGGCGTTGCTGGT 28193 Query 82696 CTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAG 82755 | || || || || ||||| || || ||||| || || || || || |||||||| | | Sbjct 28192 CCGGGGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATCGTATCGCTGG 28133 Query 82756 GTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTA 82815 || || || | | ||||||||||| ||||||||||| || || ||||||||| ||| Sbjct 28132 CCTCGACCTCGAGCGCGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATTTTTA 28073 Query 82816 TA 82817 || Sbjct 28072 TA 28071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981826143308476