Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq8 165 8e-36 seq7 147 2e-30 seq5 91.5 1e-13 >seq8 Length=1060349 Score = 165 bits (182), Expect = 8e-36 Identities = 366/537 (68%), Gaps = 13/537 (2%) Strand=Plus/Minus Query 120355 TACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCATA 120414 |||||||| || | ||||| || ||||| || || || | | ||| || | | ||| Sbjct 1001167 TACTCGCCAACCCTCTTCTCGAAGAAGTTAGTCTTTCCTTGAAGCGAGATCATCTCCATG 1001108 Query 120415 AACTCGAACGGGTTGCTCGCGTT--AAAGTATTTCGGCTGGCCCAACTGTACGAGCAGTC 120472 || |||||||| || | ||||| || | |||| | || | | | ||| || | Sbjct 1001107 AAGTCGAACGGATTTGTAGCGTTGTAATGCTTTTCTTCA--CCAAGCGCAATGAGAAGAC 1001050 Query 120473 GGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCCA 120532 ||||||| |||||||| ||||||| | ||| ||| | |||||| || | ||| | Sbjct 1001049 GGTCCGCAACAAACTCGATGTACTGTCCCATCAACTCGGAGTTCATCCCAATCAAACGTA 1000990 Query 120533 CCGGCAACGCCGACGTGAA-AAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGCG 120591 | |||||||| || || |||||| | ||| ||||||||||| | | ||| || | Sbjct 1000989 CAGGCAACGCAT-CGCAAATAAACTCGTGCTCGATGTCCACCGCATTCGTGATGATCTCC 1000931 Query 120592 AGCATAGTGTGGCCG-GGCATCTTGTGTTCGATGCGCGTTCG-GTAGTACAGGCACGCAA 120649 |||| | | | ||| || | |||| | |||| | || | ||| ||| ||||||| Sbjct 1000930 AGCACAC-GCGACCGAGGTAGTTTGTTCTTGATGTG-GTGAGAGTACAACAAACACGCAA 1000873 Query 120650 AGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCA 120709 |||||||||||| ||||| |||||||| ||||| |||||||| || || || || |||| Sbjct 1000872 AGTCCGTGTGCAACCCCTCATCGCGCGAGATCAGTTCGTTGCTGAAGGTTAGCCCAGGCA 1000813 Query 120710 TGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCT 120769 | | ||| | | |||| |||| | || ||| || |||||||| | |||| Sbjct 1000812 TCACGCCGCGCTTTTTGAGCCAGAACAGTGCACAAAATGACCCTGAAAAGAAGATACCCT 1000753 Query 120770 CCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCACT 120829 |||| ||||| |||| || |||||| || | || ||| ||| | ||||| Sbjct 1000752 CCACAGCTGCAAACGCGATCAGGCGCTCCTGGAAACT-GC--TCTCGCTCCCAATCCATC 1000696 Query 120830 TCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAGCA 120886 | |||||||||||||| || | | ||||| ||| || | ||||| ||||| Sbjct 1000695 GTACAGCCCACTCGGCCTTATTTTGGATACACGGAATCGTCTGAATCGCGTGCAGCA 1000639 >seq7 Length=1072466 Score = 147 bits (162), Expect = 2e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | |||||| || ||||| |||||||||||| | | |||| ||||| | | Sbjct 364065 AAATGCAGGGTGGATTCCTTCTGGATATTGTAATCGGCGAGCGTGCGTCCCTCCTCCAAC 364124 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||||||| |||| || ||||| ||||| |||||||||||||||||||| ||| Sbjct 364125 TGCTTGCCCGCGAAAATCAGGCGCTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATC 364184 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | |||| ||| ||| ||| ||| || |||| | || || ||||| Sbjct 364185 TTCGCCTTCACATTGTCAATCGTATCGCTGGCCTCGACCTCGAGCGCGATCGTCTTGCCC 364244 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || |||||||||||||| Sbjct 364245 GTCAACGTCTTCACGAAAATCTGCAT 364270 >seq5 Length=1237164 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/218 (70%), Gaps = 5/218 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGA 133512 ||||| | ||||| || || || || ||||| ||| | | || |||| ||||| | Sbjct 1116669 AAATGCAGTGTGGATTCCTTTTGGATGTTGTAGTCGGCGAGAGT--ACGACCCTCCTCCA 1116726 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 ||| ||||| || |||| |||||||||||||| || || || || |||||||| || Sbjct 1116727 ACTGTTTGCCTGCAAAAATCAGCCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGGA 1116786 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| ||| | | |||| |||||| | | ||| || |||| | | || || | Sbjct 1116787 TCTTCGCCTTTACGTTATCAATAGTGTCGCTAGCCTCTACCTCGAGCGCTATTGTCTTCC 1116846 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCA-TGGCTTATTT 133669 | || || || || ||||| ||||||| | ||||||| Sbjct 1116847 CTGTTAGTGTCTTCACGAAGATCTGCATTTCCTTATTT 1116884 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/209 (69%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGA 133512 ||||| | ||||| || || || || ||||| ||| | | || |||| || || | Sbjct 1116441 AAATGCAGTGTGGATTCCTTTTGGATGTTGTAGTCGGCGAGAGT--ACGACCCTCTTCCA 1116498 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 ||| ||||| || |||| |||||||||||||| || || || || |||||||| || Sbjct 1116499 ACTGTTTGCCTGCAAAAATCAGCCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGGA 1116558 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| ||| | | |||| |||||| | | ||| || || | | | || || | Sbjct 1116559 TCTTCGCCTTTACGTTATCAATAGTGTCGCTAGCCTCTACCTCAAGCGCTATTGTCTTCC 1116618 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCATG 133661 | || || || || ||||| ||||||||| Sbjct 1116619 CTGTTAGCGTCTTCACGAAGATCTGCATG 1116647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420292408160