Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq5 113 3e-20 seq14 102 5e-17 >seq5 Length=1237164 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||||||| || ||| || ||||| |||||||| |||| ||| || || | || || Sbjct 1116437 CACCAAATGCAGTGTGGATTCCTTTTGGATGTTGTAGTCGGCGAGAGTACGACCCTCTTC 1116496 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 ||| ||||| || |||||||||| |||||||| ||| | || | ||| || ||||| Sbjct 1116497 CAACTGTTTGCCTGCAAAAATCAGCCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTG 1116556 Query 33660 AATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || ||| || | || | |||||||| | || || |||| || || || || Sbjct 1116557 GATCTTCGCCTTTACGTTATCAATAGTGTCGCTAGCCTCTACCTCAAGCGCTATTGTCTT 1116616 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||||| ||| || || ||||||||||| Sbjct 1116617 CCCTGTTAGCGTCTTCACGAAGATCTGCAT 1116646 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | ||||||||| || ||| || ||||| |||||||| |||| | Sbjct 1116648 CCACCACGCAGACGGAGCACCAAATGCAGTGTGGATTCCTTTTGGATGTTGTAGTCGGCG 1116707 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || ||||| ||||| || |||||||||| |||||||| ||| | || Sbjct 1116708 AGAGTACGACCCTCCTCCAACTGTTTGCCTGCAAAAATCAGCCGCTGCTGGTCTGGGGGA 1116767 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACG 33702 | ||| || ||||| || ||| || | || | |||||||| | || || Sbjct 1116768 ATACCCTCCTTGTCTTGGATCTTCGCCTTTACGTTATCAATAGTGTCGCTAGCCTCTACC 1116827 Query 33703 TCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || || || ||||||| || || || ||||||||||| Sbjct 1116828 TCGAGCGCTATTGTCTTCCCTGTTAGTGTCTTCACGAAGATCTGCAT 1116874 >seq14 Length=332912 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || | || ||| | |||||||| || ||| || || || ||||||||||||| | Sbjct 28304 CCGCCACGCAGACGGAGGACCAAATGCAGGGTGGATTCCTTCTGGATGTTGTAATCGGCG 28245 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || ||||| ||||| || || ||||||| || ||||| || | || Sbjct 28244 AGCGTGCGGCCCTCCTCCAACTGTTTGCCCGCGAAAATCAGGCGTTGCTGGTCCGGGGGG 28185 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || ||| ||| || | ||| | || ||||| | || || Sbjct 28184 ATCCCCTCCTTGTCCTGGATCTTCGCCTTC-ACGTTGTCGATCGTATCGCTGGCCTCGAC 28126 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || |||||| || || || ||||| || || ||||||||||| Sbjct 28125 CTCGAGCGCGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 28078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703663489280