Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1 134 1e-26 >seq1 Length=2329561 Score = 134 bits (148), Expect = 1e-26 Identities = 475/733 (65%), Gaps = 33/733 (5%) Strand=Plus/Minus Query 147456 CACGGCGATAGACGCCAGATTGCAGACGGCCGTCT-CTTCGGCGTCGCTGTACTGCACGA 147514 || ||||| || |||| |||||| || || |||| || ||| | | |||| | ||| | Sbjct 96302 CAGGGCGAGGGAGGCCAAATTGCACACCGCTGTCTGCTCCGGGGATG-TGTATTCCACAA 96244 Query 147515 TTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGAT 147574 |||||| |||| || |||||| || || | | || || || || |||| Sbjct 96243 TTTCGGTACACAAATTCGAGCATTTAATCGTCCCGATGTGTTTTTGGTTCGACTTTCGAT 96184 Query 147575 TGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT-- 147632 |||||||||||||| ||||||| | || | || ||||||| ||| || || | || Sbjct 96183 TGCACGCGTCTTTGTAGAGCATAAAAGGCACCCCCGTCTCGATTTGGGTCTCCAAAATCG 96124 Query 147633 -AAACCTATGCAGGTCCTGCGCT---------CGCACCCGCTGCCGATAGCGGCCCTCGT 147682 ||||| ||| |||||||| ||||||| | | || ||| | Sbjct 96123 CAAACCA---CAGCTCCTGCGCCTGAATCGTGCGCACCCCCATCTGAC-GCGCC------ 96074 Query 147683 TTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGAC 147742 || || | | ||||||||||||||||| || || || |||||| || || |||| Sbjct 96073 --TCATAACTTTTATACAACCGCTCAAACTCCTCCCCATAACAATCGCTCAGCCCCGGAC 96016 Query 147743 ACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGAT 147802 | || ||| ||||| || |||| | | || || ||||| |||||| |||| Sbjct 96015 AGGTGTGGGGATCCATCAACGTCCACGTCCCCTCGCTCTTCACGCGCTCCATAAAAAGAT 95956 Query 147803 CCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGCCCATGTTGC 147862 | || | ||| ||| |||| | |||||| ||||| |||||| || |||| | Sbjct 95955 CAGGTATCCAAAGCCCGTAAAAAAGATCACGCGCCCGCTGATCCTCCTTCCCGGTGTTCC 95896 Query 147863 G-TTTCAAATTAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGC 147921 | ||| | || | || | | | || || || |||||||| || | || || || | Sbjct 95895 GCTTTAACATGACAAACTCGA-AAATATCCGCATGCCAGGGCTCCAGATAAACCGCAAAT 95837 Query 147922 GCACCTTTACGCTT---TCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGC 147978 || ||||| || || || || || ||||||| || | |||| ||||| || ||| Sbjct 95836 GCCCCTTTGCGTTTGCCCCCTCCTTGATCGACATAACGTGCGGTGTTATTAAAAACCCGC 95777 Query 147979 ACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCT 148038 | ||| || ||| ||| ||| ||| ||||| || ||| | || ||| |||| Sbjct 95776 AGCATCGGCACCAACCCGTTCGAAGTTCCGTTCGTCCCGGCGATATAACTTCCGGAGGCT 95717 Query 148039 CGCACTTCGTGCACGTTAACGCCAATGCCGCCGCCGTACTTTGAT-ATGGCAGCGCAATC 148097 || | | ||| |||| | ||||| || || | | | ||| | || | ||||| || Sbjct 95716 CGAATGTTGTGAACGTGCAGTCCAATCCCCCCTGC-TGCCTTGCTAATCACGGCGCACTC 95658 Query 148098 GCCCAATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGA 148157 ||| || ||| || || || || ||||| | || | | | ||||| || || Sbjct 95657 CTTCAAAGTGTCGTAAATCCCTTCAATACTGTCCTCCTTCATCGCTATTAAAAAGCAGGA 95598 Query 148158 ACACATTTGCGGA 148170 || ||| |||||| Sbjct 95597 ACTCATCTGCGGA 95585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610699558240