Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq8 187 4e-41 seq14 125 1e-22 seq16 96.9 5e-14 seq21 93.3 6e-13 >seq8 Length=1060349 Score = 187 bits (206), Expect = 4e-41 Identities = 396/583 (68%), Gaps = 15/583 (3%) Strand=Plus/Plus Query 1455731 GATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTAC 1455790 || || ||| |||| | |||| ||||||| || | ||||| || ||| || |||| Sbjct 1000284 GAAAATCCGTACCGGTATGTCATGTTCCCGATTCAGTACCATGACATCTGGCGAAAGTAC 1000343 Query 1455791 CAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGT 1455850 || || ||| || ||||||| | || ||| ||||||| ||| ||| | ||| Sbjct 1000344 -AAGGAGCAGGAGAGCTGTATTTGGACGGTGGAAGAGATCGACCTGGGCAGCGATATGGT 1000402 Query 1455851 CCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTT 1455910 |||||||| ||||| ||| | ||||| ||||||||||||||||| || | | || | Sbjct 1000403 GGACTGGGTGAAGCTGAACGATGGGGAGCGACATTTCATCAAGCACGTGCTTG-CGTTCT 1000461 Query 1455911 TCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCC 1455970 |||| | ||||| |||||||| ||||||||| || ||||| |||| || || Sbjct 1000462 TCGCGGGAAGCGACGGCATCGTCATCGAGAACCTCGCGCAGCGCTTCATGACGGACGTGA 1000521 Query 1455971 AATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTG 1456030 || | |||||||| ||| ||| |||||||| ||| | || || || || ||||| | Sbjct 1000522 AAATACCAGAGGCGCGTGCGTTCTACGGGTTTCAGCTGATGATGGAGAATATTCACTCAG 1000581 Query 1456031 AAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCT 1456090 | || |||||| | ||| | ||||| ||| | | ||| | || |||||| | | Sbjct 1000582 AGACGTACTCGGTGCTGCTGGACACGTACATTATGGATCAGGATGAGAAGTTACGTTTGC 1000641 Query 1456091 TTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGA 1456150 | | ||| || | ||| | |||| | || |||||||| ||||| | |||| Sbjct 1000642 TGCACGCGATTCAGACGATTCCGTGTATCCAAAATAAGGCCGAGTGGGCTGTACGATGGA 1000701 Query 1456151 TCAACAAGGAGGGCCTCGACACTTTGC-CGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGG 1456208 | | ||| | || ||| | ||||| || ||| ||||| || || |||| Sbjct 1000702 TTGGGAGCGAGAG------CAGTTTCCAGGAGCGCCTGATCGCGTTTGCAGCTGTGGAGG 1000755 Query 1456209 GCATCT--TTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCAT 1456266 | |||| ||||| || || ||| ||| | | || |||||||| ||||||||| | || Sbjct 1000756 GTATCTTCTTTTCAGGGTCATTTTGTGCAC--TGTTCTGGCTCAAAAAGCGCGGCGTGAT 1000813 Query 1456267 GCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 ||| || | | ||| ||||||||| | ||| ||||| || Sbjct 1000814 GCCTGGGC-TAACCTTCAGCAACGAACTGATCTCGCGCGATGA 1000855 >seq14 Length=332912 Score = 125 bits (138), Expect = 1e-22 Identities = 265/392 (68%), Gaps = 14/392 (4%) Strand=Plus/Minus Query 1600254 CCCTCTCCATCTCTCCAAGGCGGAAGCCGCCCGAGCGCGAGCGGCCCTCGACCGGCTGCT 1600313 ||| |||||| || |||| || | ||| ||| | ||| ||| |||||| ||||| Sbjct 283232 CCCGCTCCATTTCGCCAAACCGAAGGCCCCCCTCGTGCGCGCGCCCCTCGGTGGGCTGTC 283173 Query 1600314 TGGTGAGCATCTGGACGGGGCCGCGTGGTCGGGCGTGAATCTTGTCGATGGCCACGTGGC 1600373 | ||| ||||| || ||||| || |||||||| || ||||| || || ||| Sbjct 283172 GGACAAGCGGCTGGAGCGGCCCGCGCGGGCGGGCGTGGATTTTGTCCTCGGACAAGTGCT 283113 Query 1600374 GCAGGGCCTGGTAGTAGACCGGCGCCGTA-AAGATCAACGCCTCCATGGGCTCGCCGGTG 1600432 ||| ||| || ||| ||| |||| | || || | |||| |||| ||||||| Sbjct 283112 TCAGCCGCTGATAATAGGTCGG-GCCGAAGAAAATGAGGTGGTCCAGGGGCAGGCCGGTG 283054 Query 1600433 TGCGGGTGGTAGAGCACCTCCTTGCCGTAGCGCTCGCATCCG------TGGCGAGCCAAC 1600486 || || ||| || ||| ||||||||||||| | | ||| ||| | ||| Sbjct 283053 TGGCCGTTGTACAGGCACTCGTTGCCGTAGCGCTGGGAGCCGAGTTGGTGGAGGGCC--- 282997 Query 1600487 TCGGCGGCGACATCGTCGACGGTGACGCCGCCAAAGGGCGTGCCGTCGCCCACATAGCCC 1600546 | || ||| || || ||| ||| || |||||||| ||| | || | ||| Sbjct 282996 -CTGC--CGAAGTCCTCCACGACGACCGAGCAGAAGGGCGTCGCGTAGACCTCCCCCCCC 282940 Query 1600547 TCGCGGCAGGCCACCTTGCCCAGGAGGGCCTCCATCATCTTGCCCATGGTCATGCGCGAC 1600606 | ||||||||||||||| ||||| ||| || | | | ||| ||||||||||| Sbjct 282939 TTATAGCAGGCCACCTTGCCGGCGAGGGTCTCGATGAGGTGGGCCACCGTCATGCGCGAG 282880 Query 1600607 GGGATGGCGTGCGGGTTGATCACAATGTCGGG 1600638 |||||||||||||||||||| | | |||||| Sbjct 282879 GGGATGGCGTGCGGGTTGATGATCAGGTCGGG 282848 >seq16 Length=194027 Score = 96.9 bits (106), Expect = 5e-14 Identities = 123/168 (73%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 1816042 GTCGGCGCCGTCGCCGCCATATGCAAACTGGACAATGTCGCCGTTGGCGTTGCGCACGAG 1816101 |||| |||||||||||| || | |||||||| | | ||||||| |||| ||| ||| Sbjct 102396 GTCGAGGCCGTCGCCGCCGTAGACGAACTGGACGACGGCGCCGTTCGCGTCGCGGACGGA 102337 Query 1816102 GCCGCC---GCGCTTGATCTGCAGGCTCTCCATCGACTTGATGCACCGGCGCTGGATGTA 1816158 |||| | || | || ||||||||||||| |||||| | |||||||| || Sbjct 102336 GCCGTCCCAGCCCACGACG---AGGCTCTCCATCGCCTTGATCAGGCAGCGCTGGAGGTG 102280 Query 1816159 GCCACGTCCGGCGGTCTTGACGGCCGTGTCGACCAGGCCCTCGCGGCC 1816206 ||| | || |||||| || || ||||||||||| || |||||||| Sbjct 102279 GCCGGAGCGGGAGGTCTTCACCGCGGTGTCGACCAGCCCATCGCGGCC 102232 >seq21 Length=127046 Score = 93.3 bits (102), Expect = 6e-13 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 1818084 ACGCGCTCGGGAAAGGTGAGCGTCTTGACGATCTCATAGGGCACGCCCACCTCGTCAATG 1818143 || || || |||||||| ||||| | ||||| | |||||||||||||||| || | | Sbjct 38682 ACCCGTTCCGGAAAGGTCAGCGTGGCGGCGATCGAAAAGGGCACGCCCACCTCATCCACG 38741 Query 1818144 TCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGTAAAGTTGACGCGCTTGCCCATG 1818203 ||||| | || || ||||||||| ||||||| || | || ||||||||||| Sbjct 38742 TCAATATTCGGATCCCCCGTGATGACGGTTCGCGCGGAGAAATCCACCCGCTTGCCCATC 38801 Query 1818204 CAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGAACCGCTC 1818244 ||||||| || | ||| || | ||| || || | ||||| Sbjct 38802 AAATTGCCCCGCAGCCTCCCGTACTTTCCTTTAAGACGCTC 38842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177803098045608