Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq14 125 6e-24 seq7 122 8e-23 seq5 105 6e-18 >seq14 Length=332912 Score = 125 bits (138), Expect = 6e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||||||| | || ||||| || |||||||||||||| | || || | || ||| Sbjct 28286 ACCAAATGCAGGGTGGATTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCCTCCTCC 28227 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 | ||| || ||||| || |||| || |||||||||| || | | |||||||||| | Sbjct 28226 AACTGTTTGCCCGCGAAAATCAGGCGTTGCTGGTCCGGGGGGATCCCCTCCTTGTCCTGG 28167 Query 35648 ATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 ||||| ||||| |||| | | ||| ||||| | || ||||| | || |||||| || Sbjct 28166 ATCTTCGCCTTCA-CGTTGTCGATCGTATCGCTGGCCTCGACCTCGAGCGCGATCGTCTT 28108 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 |||||||| || ||||| || ||||||||| Sbjct 28107 GCCCGTCAACGTCTTCACGAAGATCTGCATT 28077 >seq7 Length=1072466 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||||||| | || ||||| || || ||||||||||| | || || | || ||| Sbjct 364062 ACCAAATGCAGGGTGGATTCCTTCTGGATATTGTAATCGGCGAGCGTGCGTCCCTCCTCC 364121 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 | |||||| ||||| || |||| ||||| ||||| | ||| | || ||||||||| Sbjct 364122 AACTGCTTGCCCGCGAAAATCAGGCGCTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTGA 364181 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 ||||| ||||| | | | | ||| ||||| | || ||||| | || |||||| || Sbjct 364182 ATCTTCGCCTTCACATTGTCAATCGTATCGCTGGCCTCGACCTCGAGCGCGATCGTCTTG 364241 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCATT 35737 |||||||| || ||||| || ||||||||| Sbjct 364242 CCCGTCAACGTCTTCACGAAAATCTGCATT 364271 >seq5 Length=1237164 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||||||| | || |||||||| |||||||| ||||| Sbjct 1116648 CCACCACGCAGACGGAGCACCAAATGCAGTGTGGATTCCTTTTGGATGTTGTAGTCGGCG 1116707 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||| ||| || || ||||| |||| |||||||||||| | ||| Sbjct 1116708 AGAGTACGACCCTCCTCCAACTGTTTGCCTGCAAAAATCAGCCGCTGCTGGTCTGGGGGA 1116767 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||||||| |||||| ||| | | | | |||||||| | || ||| Sbjct 1116768 ATACCCTCCTTGTCTTGGATCTTCGCCTTTACGTTATCAATAGTGTCGCTAGCCTCTACC 1116827 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 || | || || || || || || | || ||||| || ||||||||| Sbjct 1116828 TCGAGCGCTATTGTCTTCCCTGTTAGTGTCTTCACGAAGATCTGCATT 1116875 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||||| | | ||||||||| | || |||||||| |||||||| ||||| Sbjct 1116420 CCGCCACGTAGGCGAAGCACCAAATGCAGTGTGGATTCCTTTTGGATGTTGTAGTCGGCG 1116479 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||| ||| || || ||||| |||| |||||||||||| | ||| Sbjct 1116480 AGAGTACGACCCTCTTCCAACTGTTTGCCTGCAAAAATCAGCCGCTGCTGGTCTGGGGGA 1116539 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||||||| |||||| ||| | | | | |||||||| | || ||| Sbjct 1116540 ATACCCTCCTTGTCTTGGATCTTCGCCTTTACGTTATCAATAGTGTCGCTAGCCTCTACC 1116599 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | || || || || || || | || ||||| || |||||||| Sbjct 1116600 TCAAGCGCTATTGTCTTCCCTGTTAGCGTCTTCACGAAGATCTGCAT 1116646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793126666720