Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq5 105 7e-18 seq8 95.1 1e-14 seq7 87.8 2e-12 >seq5 Length=1237164 Score = 105 bits (116), Expect = 7e-18 Identities = 153/215 (71%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || |||||||||||||| |||||||||||| | | || || || || | |||| Sbjct 1116672 TGCAGTGTGGATTCCTTTTGGATGTTGTAGTCGGCGAGAGTACGACCCTCCTCCAACTGT 1116731 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 |||||||||||||||| |||||||| || || || || || || || ||||| || || Sbjct 1116732 TTGCCTGCAAAAATCAGCCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGGATCTTC 1116791 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || | |||||| | || || ||||| | || || || || ||| Sbjct 1116792 GCCTTTACGTTATCAATAGTGTCGCTAGCCTCTACCTCGAGCGCTATTGTCTTCCCTGTT 1116851 Query 134691 AAAGTTTTAACGAAAATTTGCATTTTGTT-TTTGT 134724 | || || ||||| || ||||||| || ||||| Sbjct 1116852 AGTGTCTTCACGAAGATCTGCATTTCCTTATTTGT 1116886 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || |||||||||||||| |||||||||||| | | || || || || | |||| Sbjct 1116444 TGCAGTGTGGATTCCTTTTGGATGTTGTAGTCGGCGAGAGTACGACCCTCTTCCAACTGT 1116503 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 |||||||||||||||| |||||||| || || || || || || || ||||| || || Sbjct 1116504 TTGCCTGCAAAAATCAGCCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGGATCTTC 1116563 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || | |||||| | || || || || | || || || || ||| Sbjct 1116564 GCCTTTACGTTATCAATAGTGTCGCTAGCCTCTACCTCAAGCGCTATTGTCTTCCCTGTT 1116623 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 | || || ||||| || ||||| Sbjct 1116624 AGCGTCTTCACGAAGATCTGCAT 1116646 >seq8 Length=1060349 Score = 95.1 bits (104), Expect = 1e-14 Identities = 297/452 (66%), Gaps = 16/452 (4%) Strand=Plus/Minus Query 21427 TATTCGCCGACCCGTCTT-TCAAAGAAATTTGTTTTTCCTTCTAGTGCAATGTTTTTCAT 21485 || ||||| |||| |||| || ||||| || || ||||||| || | || | | ||| Sbjct 1001167 TACTCGCCAACCC-TCTTCTCGAAGAAGTTAGTCTTTCCTTGAAGCGAGATCATCTCCAT 1001109 Query 21486 AAAATTAAAAGGATTGCTGGCGTAAAAACACCTTTCTTCGTTCAATTCCACGCACAA-AC 21544 || | || ||||| | |||| || | ||||||| ||| || | || || Sbjct 1001108 GAAGTCGAACGGATTTGTAGCGTTGTAATGCTTTTCTTCAC-CAAGCGCAATGAGAAGAC 1001050 Query 21545 GATCCGCCACGAATTCAATGTATTGACACATGCTGTCGCAATTCATGCCCAACAGATCGA 21604 | ||||| || || || ||||| || | ||| ||| | ||||| || | || | | Sbjct 1001049 GGTCCGCAACAAACTCGATGTACTGTCCCATCAACTCGGAGTTCATCCCAATCAAACGTA 1000990 Query 21605 CCGGTAGCGCTTCGGTGAAAAACTCCTTCTCGATAGCCACCGCTTCCTTGATCATGGCGT 21664 | || | ||| ||| | |||||| | |||||| ||||||| | | |||| || | Sbjct 1000989 CAGGCAACGCATCGCAAATAAACTCGTGCTCGATGTCCACCGCATTCGTGATGATCTCCA 1000930 Query 21665 GTATTTCAC-CGGCGGAC--AATTTGTCTTGAGGCTCGATGTATTTGTTGTAGTAGAGAC 21721 | | ||| || | || | ||||| || ||||| | ||| | | || Sbjct 1000929 GCA---CACGCGACCGAGGTAGTTTGTT------CTTGATGTGGTGAGAGTACAACAAAC 1000879 Query 21722 AAGCAAAATTGGTGTGCAATCCCTCGTCGCGCGAAATCAATTCGTTGCTGAACGTGAGAC 21781 | ||||| | |||||||| ||||| |||||||| |||| |||||||||||| || || | Sbjct 1000878 ACGCAAAGTCCGTGTGCAACCCCTCATCGCGCGAGATCAGTTCGTTGCTGAAGGTTAGCC 1000819 Query 21782 CGGGCATTAAACCTCGATTTTTAATGTAAAAAATTGCCGCAAAGCTACCGGaaaaaaaCA 21841 | ||||| | || || ||||| | | || | ||| ||| || ||||| || | Sbjct 1000818 CAGGCATCACGCCGCGCTTTTTGAGCCAGAACAGTGCACAAAATGACCCTGAAAAGAAGA 1000759 Query 21842 CGCCCTCCACAATGGCGAACGCCACCATGCGC 21873 ||||||||| || ||||| | || |||| Sbjct 1000758 TACCCTCCACAGCTGCAAACGCGATCAGGCGC 1000727 >seq7 Length=1072466 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || ||||||||||| || || ||||| ||| | | ||| | || || | ||| Sbjct 364068 TGCAGGGTGGATTCCTTCTGGATATTGTAATCGGCGAGCGTGCGTCCCTCCTCCAACTGC 364127 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 ||||| || ||||||| ||||| || || || || |||||||| || || ||||| || Sbjct 364128 TTGCCCGCGAAAATCAGGCGCTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATCTTC 364187 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || ||| | || ||| | || || ||||| | || || || || || Sbjct 364188 GCCTTCACATTGTCAATCGTATCGCTGGCCTCGACCTCGAGCGCGATCGTCTTGCCCGTC 364247 Query 134691 AAAGTTTTAACGAAAATTTGCATTTT 134716 || || || |||||||| |||||||| Sbjct 364248 AACGTCTTCACGAAAATCTGCATTTT 364273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505397869331680