Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 4e-15 seq8 89.7 6e-13 seq4 86.0 8e-12 >seq1 Length=2329561 Score = 96.9 bits (106), Expect = 4e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || ||||||| || ||||||||||| || || |||| ||| |||||| || | | Sbjct 96304 GGCAGGGCGAGGGAGGCCAAATTGCACACCGCTGTCTGCTCCGGGGATGTGTATTCCACA 96245 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 ||||| ||||| || || || | ||||||||||| | | |||||||| ||| Sbjct 96244 ATTTCGGTACACAAATTCGAGCATTTAATCGTCCCGATGTGTTTTTGGTTCGACTTTCGA 96185 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTC 111390 |||||||| || ||||||||||| | ||| ||||||||| Sbjct 96184 TTGCACGCGTCTTTGTAGAGCATAAAAGGCACCCCCGTCTC 96144 >seq8 Length=1060349 Score = 89.7 bits (98), Expect = 6e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| ||| ||| | |||||||| || || || ||||| || |||| ||| || Sbjct 1000876 GCAAAGTCCGTGTGCAACCCCTCATCGCGCGAGATCAGTTCGTTGCTGAAGGTTAGCCCA 1000817 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| | || ||||| || | ||| | | || || |||||||| || ||||||||| Sbjct 1000816 GGCATCACGCCGCGCTTTTTGAGCCAGAACAGTGCACAAAATGACCCTGAAAAGAAGATA 1000757 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTC 122810 ||||||||| |||||||| | ||||| || Sbjct 1000756 CCCTCCACAGCTGCAAACGCGATCAGGCGCTC 1000725 >seq4 Length=1647180 Score = 86.0 bits (94), Expect = 8e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 145284 TCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCA 145343 || |||||||||||||| ||||||| ||||||||||||| | ||||| ||||| ||||| Sbjct 173913 TCCTATAGTGTAGTGGTTATCACTTCGGACTTTGAATCCGAAAACCCAGGTTCGAATCCT 173972 Query 145344 GGTAGGA 145350 ||||||| Sbjct 173973 GGTAGGA 173979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031340566400