Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq8 113 6e-20 seq1 107 2e-18 >seq8 Length=1060349 Score = 113 bits (124), Expect = 6e-20 Identities = 361/546 (66%), Gaps = 27/546 (5%) Strand=Plus/Minus Query 129717 CCAGCTTGCC-ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCT- 129774 ||||||| | ||| || ||||||| ||||||||||||||| ||||| || | |||| Sbjct 1001179 CCAGCTTTCTGATACTCGCCAACCCTCTTCTCGAAGAAGTTAGTCTTTCCTTG-AAGCGA 1001121 Query 129775 GATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTC--CAATC 129832 ||| ||||||| || || || || || | | ||| || |||| || ||| | Sbjct 1001120 GATCATCTCCATGAAGTCGAACGGATTTGTAGCGTTGTAA--TGCTTTTCTTCACCAAGC 1001063 Query 129833 TGTTTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATA 129892 |||| ||||| |||| || |||| ||||||| |||| |||||||||||| Sbjct 1001062 GCAATGAGAAGACGGTCCGCAACAAACTCGATGTACTGTCCCATCAACTCGGAGTTCATC 1001003 Query 129893 CCGATGAGGT-TACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTC 129951 || || | |||| || | ||| || | || ||| | | ||| |||||||| || | Sbjct 1001002 CCAATCAAACGTACA-GGCAACGCATCGCAAATAAACTCGTGCTCGATGTCCACCGCATT 1000944 Query 129952 CCGCACGATGGCGTGAATGGTCTC-CGTGCCAGGTCTATTGCGCA--AAGTCTTGAAGAG 130008 | | ||| | | | | | || | |||| ||| | | || ||| ||| Sbjct 1000943 CGTGATGATCTCCAGCA----CACGCGACCGAGGTAGTTTGTTCTTGATGTGGTGA-GAG 1000889 Query 130009 TTCCACG-----GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAG 130063 | | || ||||| ||| ||| | ||||| || || ||||| ||||| || | Sbjct 1000888 TACAACAAACACGCAAAGTCCGTGTGCAACCCCTCATCGCGCGAGATCAGTTCGTTGCTG 1000829 Query 130064 AAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCA 130123 ||| || || ||||| | || ||||| || | |||||| | ||||||||||| || Sbjct 1000828 AAGGTTAGCCCAGGCATCACGCCGCGCTTTTTGAGCCAGAACAGTGCACAAAATGACCCT 1000769 Query 130124 GAGAAGAAGATCCCCTCCACACACGCGAACGCAAAGAGACGCT-CAGCAAAGGAGCGGGA 130182 || |||||||| ||||||||| || ||||| | || |||| | | ||| | | Sbjct 1000768 GAAAAGAAGATACCCTCCACAGCTGCAAACGCGATCAGGCGCTCCTGGAAA----CTGCT 1000713 Query 130183 CTTTGTATCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTG 130242 || | ||| ||| | ||||||| ||||| || | ||||||||| | ||||| Sbjct 1000712 CTCGCTCCCAATCCATCGTACAGCCCACTCGGCCTTATTTTGGATACACGGAATCGTCTG 1000653 Query 130243 GATCGC 130248 ||||| Sbjct 1000652 AATCGC 1000647 >seq1 Length=2329561 Score = 107 bits (118), Expect = 2e-18 Identities = 674/1061 (64%), Gaps = 41/1061 (4%) Strand=Plus/Minus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 |||||||| ||||| ||||||||||| |||| | |||| || | |||||| || | Sbjct 97174 CGGAGGTAATACATGCCCGTCTTGAGGCCCTTTTCCCAGCAGTAGAAATGCATAGACGTA 97115 Query 117897 A-ACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAA 117955 | || |||| ||||||||||| || || |||| || |||||||| ||| | Sbjct 97114 ATACGCCCGGAGGAA-GGACTTTCCATAAAAAGATTCAACGACTGCGATTGATCAATGTA 97056 Query 117956 GCGTCCC-CGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCC 118014 | |||| |||||||| ||||| | ||||||||| | ||| ||||| || || Sbjct 97055 -CTTCCCACGATCCGCGGCCATCTGGATCACATCCCGCTGTGAGATCTCCCAGACGGTTT 96997 Query 118015 TGTAGAGGTTCTTAATATCATCTGGGAT---ATCCACGATATTTTGGATGGATCC---AC 118068 ||||||| || || | || || ||| | |||| ||||||||| || | Sbjct 96996 TGTAGAGTTTTTTGAGGTCCTCGCCGATCCCTTGCACG---CGTTGGATGGAGCCGTTAA 96940 Query 118069 CCGCCTTGA---CCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGAT 118125 | ||| | || || | |||| || ||| | ||| || | || Sbjct 96939 AGGTGATGATCTCGTTGCGAAC---GGTATCATT---CCACATCCCACGCTCAACCAAAT 96886 Query 118126 CCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGA 118185 || ||| |||| ||||| || || |||||| || | || | || || | Sbjct 96885 CCCGCACCAGATATTTATTTACCACGGGAAACTCCCCACTTAACACCCGACGAAGGTAAA 96826 Query 118186 TATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTG 118245 |||| | || ||||||||| || ||||| || ||||| ||||| | || ||||| | Sbjct 96825 TATTCGAGGTAAATGGCTCAATACATTCATTATTGCCCAAAATTTGCGAGGTCGAGGCGG 96766 Query 118246 TGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGA 118305 | ||||| || |||| | | | || || | || || ||| ||| |||| | Sbjct 96765 TTGGCATAGGGGCCAACAACAAGGAATTGCGCATGCCGGAGACCTTAAGCCGTGCCTTTA 96706 Query 118306 GAGCGTCCCAGTCGTAGTTG--AGCT--TTG--TCTCCCCCTGCCACATATCAAACTGGA 118359 || ||||| || | | | ||| ||| | | ||| ||| | ||||||||| | Sbjct 96705 ACGCATCCCAATCCCA-TCGCCCGCTCGTTGGTTTTTTCCC--CCAAAGATCAAACTGCA 96649 Query 118360 GGATACCTTGGGACGCTGGCGATCCCTC-AAATGTCTCATATGGGCCCTCAACCTCCGCC 118418 ||| || |||| ||| || | || |||| | ||| || || | |||||| Sbjct 96648 AGATCCCCTGGGCCGCCGGGCTTTGGTCGAAATCGGT-ATAACTCCCTTCCATCTCCGCG 96590 Query 118419 A-AT--TCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTC 118475 | || | ||| ||||||| | |||| ||| || ||||| || || ||||| Sbjct 96589 AGATCCACCGAG---GCCTCGACCGAGGCGTAATAGATGGTTTCGAAGATTTCCTCATTC 96533 Query 118476 ATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGA 118535 | | | | |||| | ||| | | || || |||||| ||| || || Sbjct 96532 AACCGCATCGACTCGGGCTCAGTAAAGGTCTGGCGAAGCAGAATAAAAGTATCGGCAAGC 96473 Query 118536 CCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACG 118595 || ||||| || | || || ||||||| ||||||| | ||| || |||||||| Sbjct 96472 CCCTGGACGCCTATCCCGATCGGGCGATAATTCATATTGCTCCGCCGCGCCGTCTCCACT 96413 Query 118596 GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCA 118655 || || | |||| ||||| | ||| || || | |||||| |||| |||| || Sbjct 96412 GGGTAGTAGGAATTATCAATAACGCGATTAAGGTTGTAGGTGACCTCCTTCGTGACCTCG 96353 Query 118656 TGAAGCTTTTCGT-AATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 118714 | ||| || | | || ||| | |||| | | ||| || || ||||||| Sbjct 96352 TAGAGCAGTTGATGGTTGAAGACT-TGCTTCTCGACGTCCACAAACCGCGGCAGGGCGAG 96294 Query 118715 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCA 118774 || |||| ||| ||||| | |||| ||| ||||| || | |||||| || || Sbjct 96293 GGAGGCCAAATTGCACACCGCTGTCTGCTCCGGGGATGTGTATTCCACAATTTCGGTACA 96234 Query 118775 CAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATC 118834 ||| || || | ||||| || || | || ||||| || |||||| || ||||| || Sbjct 96233 CAAATTCGAGCATTTAATCGTCCCGATGTGTTTTTGGTTCGACTTTCGATTGCACGCGTC 96174 Query 118835 CTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACT 118875 ||||| ||||| | ||| ||||||||| |||||| || Sbjct 96173 TTTGTAGAGCATAAAAGGCACCCCCGTCTCGATTTGGGTCT 96133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434550643040