Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq8 141 1e-28 seq1 123 3e-23 >seq8 Length=1060349 Score = 141 bits (156), Expect = 1e-28 Identities = 344/515 (67%), Gaps = 6/515 (1%) Strand=Plus/Plus Query 59619 TGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTAC 59678 ||| | || || ||||| ||||| | | | || || ||| |||| ||||| || | Sbjct 1000365 TGGACGGTGGAAGAGATCGACCTGGGCAGCGATATGGTGGACTGGGTGAAGCTGAACGAT 1000424 Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 | |||| |||||||||||| || || || |||||||||| || || || || || Sbjct 1000425 GGGGAGCGACATTTCATCAAGCACGTGCTTGCGTTCTTCGCGGGAAGCGACGGCATCGTC 1000484 Query 59739 ATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTC 59798 || || || | | | ||| | ||| || | || | ||||| || ||||| Sbjct 1000485 ATCGAGAACCTCGCGCAGCGCTTCATGACGGACGTGAAAATACCAGAGGCGCGTGCGTTC 1000544 Query 59799 TACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGAT 59858 |||| || |||| | | | ||| ||| ||||| |||||||||||| | || | || Sbjct 1000545 TACGGGTTTCAGCTGATGATGGAGAATATTCACTCAGAGACGTACTCGGTGCTGCTGGAC 1000604 Query 59859 AAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCCC 59917 | || | | ||||| ||| |||||| || || | | || || ||||| | || Sbjct 1000605 ACGTACATTATGGATCAGGATGAGAAGTTACGTTTGCTGCACGCGATTCAGACGATTCCG 1000664 Query 59918 CGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCATTTG 59976 | | ||| | || || || ||||| | | ||||| | | | ||||| ||| Sbjct 1000665 TGTATCCAAA-ATAAGGCCGAGTGGGCTGTACGATGGATTGGGAGCGAGAGCAG--TTTC 1000721 Query 59977 CACAA-CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGT 60035 || | || || || || |||||| ||||| || |||||||| || || || || ||| Sbjct 1000722 CAGGAGCGCCTGATCGCGTTTGCAGCTGTGGAGGGTATCTTCTTTTCAGGGTCATTTTGT 1000781 Query 60036 GCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTG 60095 || | ||||||||||||||||| ||| | ||||| || || | ||| |||||| ||| Sbjct 1000782 GCACTGTTCTGGCTCAAAAAGCGCGGCGTGATGCCTGGGCTAACCTTCAGCAACGAACTG 1000841 Query 60096 ATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGC 60130 || || || || ||||| | || ||| ||||| Sbjct 1000842 ATCTCGCGCGATGAGGGGTTGCACACGGACTTTGC 1000876 >seq1 Length=2329561 Score = 123 bits (136), Expect = 3e-23 Identities = 258/377 (68%), Gaps = 8/377 (2%) Strand=Plus/Minus Query 79464 GAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCG 79523 || ||| || | || || || ||||| ||||||||||| | || || | || ||||| Sbjct 95885 GACAAACTCGAAAATATCCGCATGCCAGGGCTCCAGATAAACCGCAAATGCCCCTTTGCG 95826 Query 79524 CTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCAC 79583 ||||| || || || | ||| || || || ||||| || ||||| || ||||| ||||| Sbjct 95825 TTTGCCCCCTCCTTGATCGACATAACGTGCGGTGTTATTAAAAACCCGCAGCATCGGCAC 95766 Query 79584 GATGCCGTCGGCGACG--CCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTT- 79640 | |||| ||| | |||||||||||| ||| | ||| || |||||||| Sbjct 95765 CAACCCGTT--CGAAGTTCCGTTCGTCCCGGCGATATAACTTCCGGAGGCTCGAATGTTG 95708 Query 79641 CGAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGT 79700 || | ||| | ||| || ||||| | |||| || ||||||||||| | || Sbjct 95707 TGAAC-GTGCAGTCCAATCCCCCCTGCTGCCTTGCTAATCACGGCGCACTCCTTCAAAGT 95649 Query 79701 CTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTG 79760 ||||| || || || || ||| |||||||| || | | |||||| |||||| Sbjct 95648 GTCGTAAATCCCTTCAATACTGTCCTCCTTCATCGCTATTAAAAAGCAGGAACTCATCTG 95589 Query 79761 TGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAA-CTTTTGGC 79819 || | || |||||||| || | ||||| |||||||| ||||| || | || | Sbjct 95588 CGGACGGGGGGTGCCGGCGTTAAACAACGTCGGGGTCGCGTGGGTGAAAAAGCCATTCG- 95530 Query 79820 TCATCAGATCGTACGTC 79836 ||||| |||||| ||| Sbjct 95529 ACATCAAATCGTAGGTC 95513 Score = 93.3 bits (102), Expect = 5e-14 Identities = 146/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 20613 AGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACA 20672 || ||||||| | | |||| ||||| ||||| ||| ||||| | | ||| | | Sbjct 96976 AGGACCTCAAAAAACTCTACAAAACCGTCTGGGAGATCTCACAGCGGGATGTGATCCAGA 97035 Query 20673 TGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGA 20732 |||| || ||||| || ||||| || || || |||||| | ||| | || ||||| | Sbjct 97036 TGGCCGCGGATCGTGGGAAGTACATTGATCAATCGCAGTCGTTGAATCTTTTTATGGAAA 97095 Query 20733 ATCCGAGC--CTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAA 20790 ||| | | |||| | | | || |||||| | ||| ||||| | ||||| ||||| Sbjct 97096 GTCCTTCCTCCGGGCGTA--TTACGTCTATGCATTTCTACTGCTGGGAAAAGGGCCTCAA 97153 Query 20791 GACGGGCATGTACTATCTGCGGACCCG 20817 |||||||||||| || || || ||||| Sbjct 97154 GACGGGCATGTATTACCTCCGCACCCG 97180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524224048960