Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4 89.7 6e-13 seq1 82.4 8e-11 >seq4 Length=1647180 Score = 89.7 bits (98), Expect = 6e-13 Identities = 90/116 (78%), Gaps = 6/116 (5%) Strand=Plus/Plus Query 119078 AACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTCCTCG 119137 || ||||||| |||||||| ||| | || ||||| || ||||| || || | ||||| Sbjct 1087977 AAGACGTTGGTGAGCTTGGCCCCGAACCCATTCCGTCCGCCGGTTAC---CTTCGCCTCG 1088033 Query 119138 T---CGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGATCCA 119190 | | | |||||||||| |||||||||||| ||||| || | |||||||||||| Sbjct 1088034 TTATCATCGTAGTTGGAGGAGGTCAAAAGGTGGCCAAAAATCATCTCGGGGATCCA 1088089 >seq1 Length=2329561 Score = 82.4 bits (90), Expect = 8e-11 Identities = 132/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 55745 ACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTAC 55804 || || |||||||| ||||| | | |||| | ||| || |||||||| |||| Sbjct 96999 ACCGTCTGGGAGATCTCACAGCGGGATGTGATCCAGATGGCCGCGGATCGTGGGAAGTAC 97058 Query 55805 ATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCA-CTGGCCAAGTTGAG 55863 || || || || ||||| |||| | || ||||| | |||||| | || | || | Sbjct 97059 ATTGATCAATCGCAGTCGTTGAATCTTTTTATGGAAAGTCCTTCCTCCGGGCGTATTACG 97118 Query 55864 CTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGAC 55923 || ||||| || ||| | ||| | ||||| ||||||||||| ||||| || || || || Sbjct 97119 -TCTATGCATTTCTACTGCTGGGAAAAGGGCCTCAAGACGGGCATGTATTACCTCCGCAC 97177 Query 55924 CCGCGCC 55930 |||| || Sbjct 97178 CCGCCCC 97184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215425423200