Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq7 159 4e-34 seq5 159 4e-34 seq14 136 5e-27 seq4 86.0 7e-12 >seq7 Length=1072466 Score = 159 bits (176), Expect = 4e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || || |||||| | || |||||||| || | || ||||| ||| | | Sbjct 364271 AATGCAGATTTTCGTGAAGACGTTGACGGGCAAGACGATCGCGCTCGAGGTCGAGGCCAG 364212 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| ||| ||||||| || |||||||||||||| || || ||||| ||||| Sbjct 364211 CGATACGATTGACAATGTGAAGGCGAAGATTCAGGACAAGGAAGGCATCCCTCCTGACCA 364152 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||| || ||||| || || ||||| | ||||| | || || || || || || || Sbjct 364151 ACAGCGCCTGATTTTCGCGGGCAAGCAGTTGGAGGAGGGACGCACGCTCGCCGATTACAA 364092 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||| ||||||||||| || ||| | ||| | ||||| ||||| || Sbjct 364091 TATCCAGAAGGAATCCACCCTGCATTTGGTCCTCCGTCTGCGCGGGGG 364044 >seq5 Length=1237164 Score = 159 bits (176), Expect = 4e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || || || ||||| || | || ||||| ||| | | Sbjct 1116875 AATGCAGATCTTCGTGAAGACACTAACAGGGAAGACAATAGCGCTCGAGGTAGAGGCTAG 1116816 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| || | ||||| || || || ||||||||||| ||||| |||||||| Sbjct 1116815 CGACACTATTGATAACGTAAAGGCGAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCA 1116756 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| || |||||||| || || || | ||||| | |||||| || || ||||| || Sbjct 1116755 GCAGCGGCTGATTTTTGCAGGCAAACAGTTGGAGGAGGGTCGTACTCTCGCCGACTACAA 1116696 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||||||||| || ||| | || | ||||| || ||||| Sbjct 1116695 CATCCAAAAGGAATCCACACTGCATTTGGTGCTCCGTCTGCGTGGTGG 1116648 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| || || ||||| || | |||||||| ||| | | Sbjct 1116646 ATGCAGATCTTCGTGAAGACGCTAACAGGGAAGACAATAGCGCTTGAGGTAGAGGCTAGC 1116587 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||||| || || || ||||||||||| ||||| ||||||||| Sbjct 1116586 GACACTATTGATAACGTAAAGGCGAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCAG 1116527 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || |||||||| || || || | || || | |||||| || || ||||| || Sbjct 1116526 CAGCGGCTGATTTTTGCAGGCAAACAGTTGGAAGAGGGTCGTACTCTCGCCGACTACAAC 1116467 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||||||||| || ||| | || | || || || || || Sbjct 1116466 ATCCAAAAGGAATCCACACTGCATTTGGTGCTTCGCCTACGTGGCGG 1116420 >seq14 Length=332912 Score = 136 bits (150), Expect = 5e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || |||||| | || |||||||| || | || ||||| ||| | | Sbjct 28077 AATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACGATCGCGCTCGAGGTCGAGGCCAG 28136 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| || | || ||||||| || || |||||||||||||| || || || ||||| Sbjct 28137 CGATACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCCCCGGACCA 28196 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| || || ||||| || || || || | ||||| | || || || || || || || Sbjct 28197 GCAACGCCTGATTTTCGCGGGCAAACAGTTGGAGGAGGGCCGCACGCTCGCCGATTACAA 28256 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| || ||| | ||| | ||||| || || || Sbjct 28257 CATCCAGAAGGAATCCACCCTGCATTTGGTCCTCCGTCTGCGTGGCGG 28304 >seq4 Length=1647180 Score = 86.0 bits (94), Expect = 7e-12 Identities = 111/152 (73%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 30328 GGAATTCCCATTAAGAAACACCCTACCGAAAAAATCTGGATCCCCGAACTCATTTTTGGG 30387 || || ||||| | ||||||| | | || | ||||||||||| | |||||||| Sbjct 1088125 GGGATCCCCATCCAAAAACACCGTGAGCACAATTTGTGGATCCCCGAGATGATTTTTGGC 1088066 Query 30388 CACCTTTTGACAAGCTCCAACTACAACG---ACGAGGAGCAGCGCGTGACGGGTGGACGA 30444 ||||||||||| |||||||||| | | |||||| | || || || || ||||| Sbjct 1088065 CACCTTTTGACCTCCTCCAACTACGATGATAACGAGGCGAAG---GTAACCGGCGGACGG 1088009 Query 30445 AATGGCTACGGTGCAAAGCTCGCCAACGTTTT 30476 ||||| | ||| || |||||| ||||||| || Sbjct 1088008 AATGGGTTCGGGGCCAAGCTCACCAACGTCTT 1087977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309801174080