Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq11 122 7e-23 >seq11 Length=614005 Score = 122 bits (134), Expect = 7e-23 Identities = 368/564 (65%), Gaps = 12/564 (2%) Strand=Plus/Plus Query 29896 GTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTG 29955 ||||| || || || || ||| |||| || | |||||| || | || ||| || | | Sbjct 409216 GTAGATATGCGCATCCCCAAGGGTGTGTACGAGCTCTCCGGGCTTTAACCCAGTCGCCTT 409275 Query 29956 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCAT 30015 || |||| || | || | ||| ||||| |||||||| || || |||||||| Sbjct 409276 CGCGATCAGAATTGTCAAAAGGGCGTAAGAAGCGATATTAAAGGGCACGCCAAGCCCCAT 409335 Query 30016 GTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC-TCCGTCGC-----TCACGTAAAA 30069 || | || | ||||| ||| ||||||||||| | |||| | ||||||| || Sbjct 409336 ATCGCAGGAGCGTTGGTAAAGCATGCACGAGAGCTCCTTCGTCACCGGGTTCACGTAGAA 409395 Query 30070 CTGACACATGGCGTGGCACGGAGGAAGAGCCATG--AGGCCCAAGT-CTTTGGGGTTCCA 30126 ||| | | || || || || || ||||| | || ||| | || ||||| Sbjct 409396 CTGCCCGAGAAGATGACAGGGCGGGAGCGCCATTTTATGC---AGTGCGGACGGATTCCA 409452 Query 30127 GGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTG 30186 ||| | || || |||| ||| | ||| | || ||| |||||| || || Sbjct 409453 CGCGATGAAGAGCATCCGCCGGTCGTTTGGTCTCGTCTTGAGCGTTTCCACGATGTATTT 409512 Query 30187 CAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAA 30246 | ||||| || ||| |||| ||||| |||| || || ||||| || ||||| Sbjct 409513 GATTTGATCTACACCCTTCCCGTCGTAGTTCGCCCGGTGGTTTGTATACTCCGCGCCGAA 409572 Query 30247 ATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCC 30306 ||||| ||| || || ||||| || || || || || |||||| ||| | || || Sbjct 409573 ATGCCGCCATTGAAAGCCGTAAACAGGGCCGAGATCCATCTCTTCGTTGTCGTGCAATCC 409632 Query 30307 CCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGA 30366 | | || | ||| | | ||| ||||| | |||||||| | ||||| || || Sbjct 409633 GCGGCTATCAAGAAACGCACGGGAGCCGTTATCATCCCAGATATGAACCCCTTTATCGCT 409692 Query 30367 GAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTT 30426 ||| || | |||||| || | || ||||||||||||||||| |||| || Sbjct 409693 CAGCAGCTTTGCGTTTGTCTCGCCGCGGAGAAACCACAGCAGCTCCTCGGAGACGCCCCG 409752 Query 30427 CCAAAAGACCCTCTTGGTCGTGAG 30450 ||||||||| | ||||| ||||| Sbjct 409753 CCAAAAGACGCGTTTGGTGGTGAG 409776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406309984039728