Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq5 105 4e-18 >seq5 Length=1237164 Score = 105 bits (116), Expect = 4e-18 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | || || | ||||||||| || ||| |||||||| ||||| || || | Sbjct 1116419 GCCGCCACGTAGGCGAAGCACCAAATGCAGTGTGGATTCCTTTTGGATGTTGTAGTCGGC 1116478 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| | ||||| || ||||| || | ||||| ||||| || || Sbjct 1116479 GAGAGTACGACCCTCTTCCAACTGTTTGCCTGCAAAAATCAGCCGCTGCTGGTCTGGGGG 1116538 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTC-TTCGCTCTCC 34656 | |||||||||||| |||| || | || ||| || ||| ||||| | || ||| Sbjct 1116539 AATACCCTCCTTGTCTTGGATC-TTCGCCTTTACGTTATCAATAGTGTCGCTAGC-CTCT 1116596 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || | | ||| || || || |||| ||| ||||| || ||||||||| Sbjct 1116597 ACCTCAAGCGCTATTGTCTTCCCTGTTAGCGTCTTCACGAAGATCTGCATG 1116647 Score = 95.1 bits (104), Expect = 8e-15 Identities = 156/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||||||| || ||| |||||||| ||||| || || | || || || Sbjct 1116657 AGACGGAGCACCAAATGCAGTGTGGATTCCTTTTGGATGTTGTAGTCGGCGAGAGTACGA 1116716 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || | ||||| || ||||| || | ||||| ||||| || || | |||||| Sbjct 1116717 CCCTCCTCCAACTGTTTGCCTGCAAAAATCAGCCGCTGCTGGTCTGGGGGAATACCCTCC 1116776 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 |||||| |||| || | || ||| || ||| ||||| | || ||| || || | | Sbjct 1116777 TTGTCTTGGATC-TTCGCCTTTACGTTATCAATAGTGTCGCTAGC-CTCTACCTCGAGCG 1116834 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| || || || |||| || ||||| || |||||||| Sbjct 1116835 CTATTGTCTTCCCTGTTAGTGTCTTCACGAAGATCTGCAT 1116874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729277795572