Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq14 84.2 2e-11 seq5 82.4 5e-11 >seq14 Length=332912 Score = 84.2 bits (92), Expect = 2e-11 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 27903 GGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCG 27961 ||| |||||||| | ||||| || || ||||| ||||| || | |||| ||| | ||| Sbjct 28191 GGACCAGCAACGCCTGATTTTCGCGGGCAAACAGTTGGAGGAGGGCCGCACGCTCG-CCG 28249 Query 27962 ATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| || || ||| |||||||||| | ||| |||||||||| Sbjct 28250 ATTACAACATCCAGAAGGAATCCACCCTGCATTTGGTCCTCCGTCTGCGTGGCGG 28304 >seq5 Length=1237164 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || ||| |||| || ||||| ||| | |||||||| || ||||| ||||| Sbjct 1116781 GACAAGGAGGGTATTCCCCCAGACCAGCAGCGGCTGATTTTTGCAGGCAAACAGTTGGAG 1116722 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | | |||| |||||||||||||| || ||| |||||||||| | Sbjct 1116721 GAGGGTCGTACTCTCGCCGACTACAACATCCAAAAGGAATCCACACTGCATTTGGTGCTC 1116662 Query 28003 CGTTTGCGTGGCGGC 28017 ||| ||||||| ||| Sbjct 1116661 CGTCTGCGTGGTGGC 1116647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355862035685868