Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq7 156 1e-32 seq14 149 1e-30 seq5 122 2e-22 >seq7 Length=1072466 Score = 156 bits (172), Expect = 1e-32 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | || || ||||| || || ||||| || ||||| || || || | ||| || Sbjct 364059 AGGACCAAATGCAGGGTGGATTCCTTCTGGATATTGTAATCGGCGAGCGTGCGTCCCTCC 364118 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||||||| ||||| || ||||| |||||||||||||| | |||||||||||| Sbjct 364119 TCCAACTGCTTGCCCGCGAAAATCAGGCGCTGTTGGTCAGGAGGGATGCCTTCCTTGTCC 364178 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||||| || || || || || | || |||||||| | ||||||| Sbjct 364179 TGAATCTTCGCCTTCACATTGTCAATCGTATCGCTGGCCTCGACCTCGAGCGCGATCGTC 364238 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATGG 211121 || ||||| | ||||| || || | ||||||||| ||| Sbjct 364239 TTGCCCGTCAACGTCTTCACGAAAATCTGCATTTTTTGG 364277 >seq14 Length=332912 Score = 149 bits (164), Expect = 1e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | || || ||||| || || |||||||| ||||| || || || | || || Sbjct 28289 AGGACCAAATGCAGGGTGGATTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCCTCC 28230 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| ||||| ||||| || |||||||| ||||| || || | || ||||||||| Sbjct 28229 TCCAACTGTTTGCCCGCGAAAATCAGGCGTTGCTGGTCCGGGGGGATCCCCTCCTTGTCC 28170 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||| || || | || |||||||| | ||||||| Sbjct 28169 TGGATCTTCGCCTTCACGTTGTCGATCGTATCGCTGGCCTCGACCTCGAGCGCGATCGTC 28110 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| | ||||| || || | ||||||||| Sbjct 28109 TTGCCCGTCAACGTCTTCACGAAGATCTGCATTTT 28075 >seq5 Length=1237164 Score = 122 bits (134), Expect = 2e-22 Identities = 152/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || ||||| || ||||||||||| || || || || || | || || |||| ||| Sbjct 1116672 TGCAGTGTGGATTCCTTTTGGATGTTGTAGTCGGCGAGAGTACGACCCTCCTCCAACTGT 1116731 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 |||||||| || || || || || ||||| || |||| || |||||||| |||||||| Sbjct 1116732 TTGCCTGCAAAAATCAGCCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGGATCTTC 1116791 Query 211032 TGTTTCACGTTTTCGATGGTGTC-AGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || ||||| || || ||||| ||| || |||||||| | || ||||| || || Sbjct 1116792 GCCTTTACGTTATCAATAGTGTCGCTAGC-CTCTACCTCGAGCGCTATTGTCTTCCCTGT 1116850 Query 211091 GAGAGTCTTTACAAACACCTGCATTT 211116 || ||||| || || | |||||||| Sbjct 1116851 TAGTGTCTTCACGAAGATCTGCATTT 1116876 Score = 118 bits (130), Expect = 2e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || ||||| || ||||||||||| || || || || || | || ||||||| ||| Sbjct 1116444 TGCAGTGTGGATTCCTTTTGGATGTTGTAGTCGGCGAGAGTACGACCCTCTTCCAACTGT 1116503 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 |||||||| || || || || || ||||| || |||| || |||||||| |||||||| Sbjct 1116504 TTGCCTGCAAAAATCAGCCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGGATCTTC 1116563 Query 211032 TGTTTCACGTTTTCGATGGTGTC-AGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || ||||| || || ||||| ||| || ||||| || | || ||||| || || Sbjct 1116564 GCCTTTACGTTATCAATAGTGTCGCTAGC-CTCTACCTCAAGCGCTATTGTCTTCCCTGT 1116622 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || | |||||| Sbjct 1116623 TAGCGTCTTCACGAAGATCTGCAT 1116646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159150752462660