Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq7 138 3e-27 seq14 127 5e-24 seq5 98.7 2e-15 >seq7 Length=1072466 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | || || |||||||| || |||| |||||||||||| | || | || || Sbjct 364059 AGGACCAAATGCAGGGTGGATTCCTTCTGGATATTGTAATCGGCGAGCGTGCGTCCCTCC 364118 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| || ||||| || || || |||||||| || || || ||||||||||| Sbjct 364119 TCCAACTGCTTGCCCGCGAAAATCAGGCGCTGTTGGTCAGGAGGGATGCCTTCCTTGTCC 364178 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||||||| || || || || || || || || | || ||||||| Sbjct 364179 TGAATCTTCGCCTTCACATTGTCAATCGTATCGCTGGCCTCGACCTCGAGCGCGATCGTC 364238 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTATGG 225720 ||||||||||| || || | ||| | |||||||| ||| Sbjct 364239 TTGCCCGTCAACGTCTTCACGAAAATCTGCATTTTTTGG 364277 >seq14 Length=332912 Score = 127 bits (140), Expect = 5e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | || || |||||||| || |||| ||||||||||| | || | || || Sbjct 28289 AGGACCAAATGCAGGGTGGATTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCCTCC 28230 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||| || || ||||| || || ||||| ||||| || || || || |||||||| Sbjct 28229 TCCAACTGTTTGCCCGCGAAAATCAGGCGTTGCTGGTCCGGGGGGATCCCCTCCTTGTCC 28170 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| ||||| || || || || || || | || ||||||| Sbjct 28169 TGGATCTTCGCCTTCACGTTGTCGATCGTATCGCTGGCCTCGACCTCGAGCGCGATCGTC 28110 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||||||||| || || | ||| | |||||||| Sbjct 28109 TTGCCCGTCAACGTCTTCACGAAGATCTGCATTTT 28075 >seq5 Length=1237164 Score = 98.7 bits (108), Expect = 2e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || |||||||| ||||||| ||||| ||||| | ||| | || ||||| | ||| Sbjct 1116444 TGCAGTGTGGATTCCTTTTGGATGTTGTAGTCGGCGAGAGTACGACCCTCTTCCAACTGT 1116503 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 || || || || || || || || ||||| || |||||||| ||||||||||||||||| Sbjct 1116504 TTGCCTGCAAAAATCAGCCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGGATCTT 1116562 Score = 95.1 bits (104), Expect = 3e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || |||||||| ||||||| ||||| ||||| | ||| | || || || | ||| Sbjct 1116672 TGCAGTGTGGATTCCTTTTGGATGTTGTAGTCGGCGAGAGTACGACCCTCCTCCAACTGT 1116731 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || || || || || || ||||| || |||||||| ||||||||||||||||| Sbjct 1116732 TTGCCTGCAAAAATCAGCCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGGATCTTC 1116791 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| || || || ||||| | || || || | || || ||||| || || Sbjct 1116792 GCCTTTACGTTATCAATAGTGTCGCTAGCCTCTACCTCGAGCGCTATTGTCTTCCCTGTT 1116851 Query 225691 AAAGTTTTTATGAACACTTGCATTT 225715 | || || | ||| | ||||||| Sbjct 1116852 AGTGTCTTCACGAAGATCTGCATTT 1116876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192529916538296