Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq11 102 7e-17 >seq11 Length=614005 Score = 102 bits (112), Expect = 7e-17 Identities = 355/561 (63%), Gaps = 6/561 (1%) Strand=Plus/Plus Query 29668 GTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTG 29727 ||||| || ||||| || |||||||| || | |||||| || | || ||| || | | Sbjct 409216 GTAGATATGCGCATCCCCAAGGGTGTGTACGAGCTCTCCGGGCTTTAACCCAGTCGCCTT 409275 Query 29728 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCAT 29787 || |||| || | || | ||| ||||| ||||||||||| || |||||||| Sbjct 409276 CGCGATCAGAATTGTCAAAAGGGCGTAAGAAGCGATATTAAAGGGCACGCCAAGCCCCAT 409335 Query 29788 GTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTC-TCCGTCGC-----TCACGTAAAA 29841 || | || | ||||| ||| |||||||||||| | |||| | ||||||| || Sbjct 409336 ATCGCAGGAGCGTTGGTAAAGCATGCACGAGAGCTCCTTCGTCACCGGGTTCACGTAGAA 409395 Query 29842 CTGACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGC 29901 ||| | | ||| || || || || ||||| | || | || ||||| || Sbjct 409396 CTGCCCGAGAAGATGACAGGGCGGGAGCGCCATTTTATGCAGTGCGGACGGATTCCACGC 409455 Query 29902 ACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAG 29961 | || || |||| ||| | ||| | || ||| |||||| || || | Sbjct 409456 GATGAAGAGCATCCGCCGGTCGTTTGGTCTCGTCTTGAGCGTTTCCACGATGTATTTGAT 409515 Query 29962 CTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATG 30021 ||||| || ||| |||| ||||| | ||||||| Sbjct 409516 TTGATCTACACCCTTCCCGTCGTAGTTCGCCCGGTGGTTTGTATACTCCGCGCCGAAATG 409575 Query 30022 CCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCT 30081 || ||| || || ||||| || || || || || |||||| ||| | || || | Sbjct 409576 CCGCCATTGAAAGCCGTAAACAGGGCCGAGATCCATCTCTTCGTTGTCGTGCAATCCGCG 409635 Query 30082 CTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAG 30141 | || | ||| | | ||| ||||| | |||||||| | ||||| || ||| || Sbjct 409636 GCTATCAAGAAACGCACGGGAGCCGTTATCATCCCAGATATGAACCCCTTTATCGCTCAG 409695 Query 30142 CTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCA 30201 | || | |||||| || | || ||||||||||||||||| |||| || ||| Sbjct 409696 CAGCTTTGCGTTTGTCTCGCCGCGGAGAAACCACAGCAGCTCCTCGGAGACGCCCCGCCA 409755 Query 30202 AAAGACCCTCTTGGTCGTGAG 30222 |||||| | ||||| ||||| Sbjct 409756 AAAGACGCGTTTGGTGGTGAG 409776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406162784190424