Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq11 125 5e-24 >seq11 Length=614005 Score = 125 bits (138), Expect = 5e-24 Identities = 384/588 (65%), Gaps = 12/588 (2%) Strand=Plus/Plus Query 27138 CTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTC 27197 |||||| | | ||||||| ||||| || || || || |||||||| || | ||| Sbjct 409192 CTTCAGTGCTGAAACGTGATTTTTGTAGATATGCGCATCCCCAAGGGTGTGTACGAGCTC 409251 Query 27198 TCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGAT 27257 ||| || | || ||| || | | || |||| || | || | ||| ||||| Sbjct 409252 TCCGGGCTTTAACCCAGTCGCCTTCGCGATCAGAATTGTCAAAAGGGCGTAAGAAGCGAT 409311 Query 27258 GTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC 27317 |||||||| || || |||||||| || | || | ||||| ||| ||||||||||| Sbjct 409312 ATTAAAGGGCACGCCAAGCCCCATATCGCAGGAGCGTTGGTAAAGCATGCACGAGAGCTC 409371 Query 27318 --TC--CATCGCTT--ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATG-- 27369 || || || | ||||| ||||| | | || || || || || ||||| Sbjct 409372 CTTCGTCACCGGGTTCACGTAGAACTGCCCGAGAAGATGACAGGGCGGGAGCGCCATTTT 409431 Query 27370 AGGCCCAAGT-CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTT 27428 | || ||| | || ||||| ||| | || || |||| ||| | ||| | | Sbjct 409432 ATGC---AGTGCGGACGGATTCCACGCGATGAAGAGCATCCGCCGGTCGTTTGGTCTCGT 409488 Query 27429 CCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCT 27488 | ||| |||||| || || | ||||| || ||| |||| ||||| ||| Sbjct 409489 CTTGAGCGTTTCCACGATGTATTTGATTTGATCTACACCCTTCCCGTCGTAGTTCGCCCG 409548 Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 || || ||||| || |||||||||| |||||| || ||||| || || || || || Sbjct 409549 GTGGTTTGTATACTCCGCGCCGAAATGCCGCCATTGAAAGCCGTAAACAGGGCCGAGATC 409608 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 |||||| ||| | || || | | || | ||| | | ||| ||||| | || Sbjct 409609 CATCTCTTCGTTGTCGTGCAATCCGCGGCTATCAAGAAACGCACGGGAGCCGTTATCATC 409668 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCA 27668 |||||| | ||||| || ||| ||| || | |||||| || | || ||||| Sbjct 409669 CCAGATATGAACCCCTTTATCGCTCAGCAGCTTTGCGTTTGTCTCGCCGCGGAGAAACCA 409728 Query 27669 CAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG 27716 |||||||||||| |||| || ||||||||| | ||||| ||||| Sbjct 409729 CAGCAGCTCCTCGGAGACGCCCCGCCAAAAGACGCGTTTGGTGGTGAG 409776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369506821717004