Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1 111 2e-19 >seq1 Length=2329561 Score = 111 bits (122), Expect = 2e-19 Identities = 346/527 (66%), Gaps = 8/527 (2%) Strand=Plus/Minus Query 76509 TATATAACCGTTCAAATTCATCTCCCCA-AACA-TCATCCAAACCAGGACATTCATTCGG 76566 |||| ||||| ||||| || ||||||| |||| || || || ||||| | || Sbjct 96063 TATACAACCGCTCAAACTC--CTCCCCATAACAATCGCTCAGCCCCGGACAGGTGTGGGG 96006 Query 76567 ACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCA 76626 | |||||| | |||| || || ||| || || | |||||| |||||||||||||| Sbjct 96005 ATCCATCAACGTCCACGTCCCCTCGCTCTTCACGCGCTCCATAAAAAGATCAGGTATCCA 95946 Query 76627 TAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTT-TTTAAGAT 76685 || | ||| ||||| || | | | || || || || || ||| ||||| || Sbjct 95945 AAGCCCGTAAAAAAGATCACGCGCCCGCTGATCCTCCTTCCCGGTGTTCCGCTTTAACAT 95886 Query 76686 CTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTC 76745 | ||||| | |||||| | |||||| || || ||||| | ||| | | || | Sbjct 95885 G-ACAAACTCGAAAATATCCGCATGCCAGGGCTCCAGATAAACCGCAAATGCCCCTTTGC 95827 Query 76746 GTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAA 76805 |||| ||||| ||||| | ||| | || ||||||||| |||| | || ||| || | Sbjct 95826 GTTTGCCCCCTCCTTGATCGACATAACGTGCGGTGTTATTAAAAACCCGCAGCATCGGCA 95767 Query 76806 TAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTAC 76865 | ||||| || || || || || || | ||||||||||| | || ||||| || Sbjct 95766 CCAACCCGTTCGAAGTTCCGTTCGTCCCGGCGATATAACTTCCGGAGGCTCGAATGTTGT 95707 Query 76866 TAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGT 76925 || || || || || ||||| || || | || || ||||| |||| Sbjct 95706 GAACGTGCAGTCCAATCCCCCCTGCTGCCTTGCTAATCACGGCGCACTCCTTCAAAGTGT 95647 Query 76926 CATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGA 76984 | || || || || ||||| || ||| |||| | || || ||| ||| | ||| || Sbjct 95646 CGTAAATCCCTTCAATACTGTCCTCCTTCATCGCTATTAA-AAAGCAGGAACTCATCTGC 95588 Query 76985 TGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAA 77031 || | || || || |||||||| || || | || || ||||| Sbjct 95587 GGACGGGGGGTGCCGGCGTTAAACAACGTCGGGGTCGCGTGGGTGAA 95541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712933651418880