Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq5 185 2e-41 seq14 183 6e-41 seq7 149 1e-30 seq8 87.8 4e-12 >seq5 Length=1237164 Score = 185 bits (204), Expect = 2e-41 Identities = 182/235 (77%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || |||| ||| | ||| ||| ||||||||||||||||| || Sbjct 1116648 CCACCACGCAGACGGAGCACCAAATGCAGTGTGGATTCCTTTTGGATGTTGTAGTCGGCG 1116707 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || ||||| | ||||| || ||||| |||| || || ||||| ||| Sbjct 1116708 AGAGTACGACCCTCCTCCAACTGTTTGCCTGCAAAAATCAGCCGCTGCTGGTCTGGGGGA 1116767 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||||||||||||||| || |||||| |||| |||||||| ||| || || Sbjct 1116768 ATACCCTCCTTGTCTTGGATCTTCGCCTTTACGTTATCAATAGTGTCGCTAGCCTCTACC 1116827 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCATAT 283107 ||||| | || ||||| || || | ||||| ||||| |||||||||| | ||| Sbjct 1116828 TCGAGCGCTATTGTCTTCCCTGTTAGTGTCTTCACGAAGATCTGCATTTCCTTAT 1116882 Score = 172 bits (190), Expect = 1e-37 Identities = 185/245 (76%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 282855 TAAAAAATAAAACGTGAACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTT 282914 ||||| ||| | | | || ||||| |||||||| |||| ||| | ||| ||| ||| Sbjct 1116402 TAAAACATAGATTTTTAGCCGCCACGTAGGCGAAGCACCAAATGCAGTGTGGATTCCTTT 1116461 Query 282915 TGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAA 282974 |||||||||||||| || || || || || || || | ||||| || ||||| |||| Sbjct 1116462 TGGATGTTGTAGTCGGCGAGAGTACGACCCTCTTCCAACTGTTTGCCTGCAAAAATCAGC 1116521 Query 282975 CGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATA 283034 || || ||||| |||||||||||||||||||||||||| || |||||| |||| ||| Sbjct 1116522 CGCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGGATCTTCGCCTTTACGTTATCAATA 1116581 Query 283035 GTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATC 283094 ||||| ||| || || || || | || ||||| || || | ||||| ||||| ||| Sbjct 1116582 GTGTCGCTAGCCTCTACCTCAAGCGCTATTGTCTTCCCTGTTAGCGTCTTCACGAAGATC 1116641 Query 283095 TGCAT 283099 ||||| Sbjct 1116642 TGCAT 1116646 >seq14 Length=332912 Score = 183 bits (202), Expect = 6e-41 Identities = 181/234 (77%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| || || |||| ||| | ||| ||| || ||||||||||| || || Sbjct 28304 CCGCCACGCAGACGGAGGACCAAATGCAGGGTGGATTCCTTCTGGATGTTGTAATCGGCG 28245 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| | ||||| || || || |||| ||||| ||||| || Sbjct 28244 AGCGTGCGGCCCTCCTCCAACTGTTTGCCCGCGAAAATCAGGCGTTGCTGGTCCGGGGGG 28185 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||| || || || ||||| Sbjct 28184 ATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATCGTATCGCTGGCCTCGACC 28125 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCATA 283106 ||||| | ||||||||| |||||||| ||||| ||||| ||||||||||| ||| Sbjct 28124 TCGAGCGCGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATTTTTATA 28071 >seq7 Length=1072466 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || ||||| || || |||| ||| | ||| ||| || ||||| ||||| || || Sbjct 364044 CCCCCGCGCAGACGGAGGACCAAATGCAGGGTGGATTCCTTCTGGATATTGTAATCGGCG 364103 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| | || || || || || |||| || ||||||||| || Sbjct 364104 AGCGTGCGTCCCTCCTCCAACTGCTTGCCCGCGAAAATCAGGCGCTGTTGGTCAGGAGGG 364163 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| || ||||| || || || | || || || || || ||||| Sbjct 364164 ATGCCTTCCTTGTCCTGAATCTTCGCCTTCACATTGTCAATCGTATCGCTGGCCTCGACC 364223 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| | ||||||||| |||||||| ||||| ||||| ||||||||||| Sbjct 364224 TCGAGCGCGATCGTCTTGCCCGTCAACGTCTTCACGAAAATCTGCATTTT 364273 >seq8 Length=1060349 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 230193 GAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGG 230252 ||||| |||||||| || | ||| ||| | || || ||||| | || | ||||| Sbjct 1000965 GAGTTTATTTGCGATGCGTTGCCTGTACGTTTGATTGGGATGAACTCCGAGTTGATGGGA 1001024 Query 230253 CAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTAT 230312 || || ||||| || || || || ||| || || | ||||| || | || || || Sbjct 1001025 CAGTACATCGAGTTTGTTGCGGACCGTCTTCTCATTGCGCTTGGTGAAGAAAAGCATTAC 1001084 Query 230313 AACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTC 230372 ||| | | || || |||| || |||||| | || || || || || || ||||||||| Sbjct 1001085 AACGCTACAAATCCGTTCGACTTCATGGAGATGATCTCGCTTCAAGGAAAGACTAACTTC 1001144 Query 230373 TTCGAAAAGCGTGTCAGCGATTATCA 230398 ||||| ||| | || |||| ||||| Sbjct 1001145 TTCGAGAAGAGGGTTGGCGAGTATCA 1001170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738073446936