Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq14 134 3e-26 seq7 125 2e-23 >seq14 Length=332912 Score = 134 bits (148), Expect = 3e-26 Identities = 156/210 (74%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || |||||||| || | || || || |||||| | |||||||| || Sbjct 28075 AAAATGC---AGATCTTCGTGAAGACGTTGACGGGCAAGACGATCGCGCTCGAGGTCGAG 28131 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 | || || ||||| ||||| || ||||| |||||||| || || ||||| ||| Sbjct 28132 GCCAGCGATACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCCCCG 28191 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 ||||||||||| || || ||||| || |||||| | || || || | || || |||||| Sbjct 28192 GACCAGCAACGCCTGATTTTCGCGGGCAAACAGTTGGAGGAGGGCCGCACGCTCGCCGAT 28251 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCAT 178124 || ||| |||| || ||||| || |||||| Sbjct 28252 TACAACATCCAGAAGGAATCCACCCTGCAT 28281 >seq7 Length=1072466 Score = 125 bits (138), Expect = 2e-23 Identities = 154/210 (73%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | ||||||||||| || | || || || |||||| | |||||||| || Sbjct 364273 AAAATGC---AGATTTTCGTGAAGACGTTGACGGGCAAGACGATCGCGCTCGAGGTCGAG 364217 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 | || || || || || || || |||||||||||||| ||||| |||||||| Sbjct 364216 GCCAGCGATACGATTGACAATGTGAAGGCGAAGATTCAGGACAAGGAAGGCATCCCTCCT 364157 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 ||||| || || || || ||||| || || ||| | || || ||| | || || |||||| Sbjct 364156 GACCAACAGCGCCTGATTTTCGCGGGCAAGCAGTTGGAGGAGGGACGCACGCTCGCCGAT 364097 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCAT 178124 || || |||| || ||||| || |||||| Sbjct 364096 TACAATATCCAGAAGGAATCCACCCTGCAT 364067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203729904484296