Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000442495.1_202013-07-31] 12,772 sequences; 27,283,778 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq4130 251 8e-62 seq2683 251 8e-62 seq716 251 8e-62 seq393 251 8e-62 seq6110 152 6e-32 >seq4130 Length=3478 Score = 251 bits (278), Expect = 8e-62 Identities = 427/613 (70%), Gaps = 12/613 (2%) Strand=Plus/Minus Query 145668 GGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGAC 145727 ||| ||||| ||| ||| | ||||||||||| ||| ||||||||||| ||||| Sbjct 2735 GGTGAGCTGCTGCTGCAGCGCGTCCACGTGGTTCTTGTACACGTGCGCGTCGCCCAGCGT 2676 Query 145728 GTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGA 145787 |||||||| |||||||||| || ||||| | ||||| | | ||||| | || Sbjct 2675 GTGGATGAGCTCCCCGGGCTTCAGCCCCGTCGCCTTGGCGATGAGGATAGTCAGGAAGGC 2616 Query 145788 GTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTG 145847 ||| ||| |||||||||||||| || || |||||||| | ||||||||||||| Sbjct 2615 GTACGAGGCGATGTTGAAGGGCACACCGAGGCCCATGTCGCAGCTGCGCTGGTACAGCAT 2556 Query 145848 GCAGGAGAGCTCCCCGCCCG-------CCACGTAGAACTGGCACAGGAGGTGGCAGGGCG 145900 |||| |||| || || | |||||||||||||| ||||||||||| |||| Sbjct 2555 GCAGCTCAGCT-CCTGCGTGTTGGGGTTCACGTAGAACTGGCCGAGGAGGTGGCACGGCG 2497 Query 145901 GCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTG-CTC 145959 |||| ||||| | || | ||||||||||| || |||| || |||| | | | | Sbjct 2496 GCAGCGCCATCTTGTCAAGCGCGGCCGGGTTCCACGCCGTGAAGAGCAGCCGGCGGTCGC 2437 Query 145960 TCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGG 146019 | ||| ||| |||||| | | | | | | | ||| |||||| ||||||| || | Sbjct 2436 T-GGGATTCGTCTTGAGCGTCTCGACGATGCGCTTGATCTGGTCGACGCCCTTGCCGTCG 2378 Query 146020 TAATCTGTC-TTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGAC 146078 || | |||| ||| || | ||| |||| |||||||| | ||||||||| |||||||| Sbjct 2377 TAGT-TGTCGTTGAAGGACGTGTAGTCGGCGCCGAAGTGGCGCCACTGGAAGCCGTAGAC 2319 Query 146079 GGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGA 146138 ||||||||||||| || |||| || ||| | | |||||||| | ||| Sbjct 2318 GGGCCCCAGGTCCATCTCTTCGTAGTGCGTGAGGCCGCGGCTGTCGAGGAAGGCGCGGCT 2259 Query 146139 CCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCC 146198 |||||| |||||||||| | || |||| | | | |||| || | || || ||| Sbjct 2258 GCCGTTGTCGTCCCAGATGTGGATGCCCTTGTCCGCGAGCAGCTTCGCGTTGGTCTCCCC 2199 Query 146199 CCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAG 146258 | | |||||||| ||||| || || || | ||||||||| | ||| || || || Sbjct 2198 GCGCAGGAACCAGATGAGCTCCTCCGACACGCCGCGCCAGAAGACGCGCTTCGTCGTGAG 2139 Query 146259 CAGGGGGAACTGG 146271 || || | |||| Sbjct 2138 GAGCGGCAGCTGG 2126 >seq2683 Length=3852 Score = 251 bits (278), Expect = 8e-62 Identities = 427/613 (70%), Gaps = 12/613 (2%) Strand=Plus/Minus Query 145668 GGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGAC 145727 ||| ||||| ||| ||| | ||||||||||| ||| ||||||||||| ||||| Sbjct 2894 GGTGAGCTGCTGCTGCAGCGCGTCCACGTGGTTCTTGTACACGTGCGCGTCGCCCAGCGT 2835 Query 145728 GTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGA 145787 |||||||| |||||||||| || ||||| | ||||| | | ||||| | || Sbjct 2834 GTGGATGAGCTCCCCGGGCTTCAGCCCCGTCGCCTTGGCGATGAGGATAGTCAGGAAGGC 2775 Query 145788 GTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTG 145847 ||| ||| |||||||||||||| || || |||||||| | ||||||||||||| Sbjct 2774 GTACGAGGCGATGTTGAAGGGCACACCGAGGCCCATGTCGCAGCTGCGCTGGTACAGCAT 2715 Query 145848 GCAGGAGAGCTCCCCGCCCG-------CCACGTAGAACTGGCACAGGAGGTGGCAGGGCG 145900 |||| |||| || || | |||||||||||||| ||||||||||| |||| Sbjct 2714 GCAGCTCAGCT-CCTGCGTGTTGGGGTTCACGTAGAACTGGCCGAGGAGGTGGCACGGCG 2656 Query 145901 GCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTG-CTC 145959 |||| ||||| | || | ||||||||||| || |||| || |||| | | | | Sbjct 2655 GCAGCGCCATCTTGTCAAGCGCGGCCGGGTTCCACGCCGTGAAGAGCAGCCGGCGGTCGC 2596 Query 145960 TCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGG 146019 | ||| ||| |||||| | | | | | | | ||| |||||| ||||||| || | Sbjct 2595 T-GGGATTCGTCTTGAGCGTCTCGACGATGCGCTTGATCTGGTCGACGCCCTTGCCGTCG 2537 Query 146020 TAATCTGTC-TTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGAC 146078 || | |||| ||| || | ||| |||| |||||||| | ||||||||| |||||||| Sbjct 2536 TAGT-TGTCGTTGAAGGACGTGTAGTCGGCGCCGAAGTGGCGCCACTGGAAGCCGTAGAC 2478 Query 146079 GGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGA 146138 ||||||||||||| || |||| || ||| | | |||||||| | ||| Sbjct 2477 GGGCCCCAGGTCCATCTCTTCGTAGTGCGTGAGGCCGCGGCTGTCGAGGAAGGCGCGGCT 2418 Query 146139 CCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCC 146198 |||||| |||||||||| | || |||| | | | |||| || | || || ||| Sbjct 2417 GCCGTTGTCGTCCCAGATGTGGATGCCCTTGTCCGCGAGCAGCTTCGCGTTGGTCTCCCC 2358 Query 146199 CCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAG 146258 | | |||||||| ||||| || || || | ||||||||| | ||| || || || Sbjct 2357 GCGCAGGAACCAGATGAGCTCCTCCGACACGCCGCGCCAGAAGACGCGCTTCGTCGTGAG 2298 Query 146259 CAGGGGGAACTGG 146271 || || | |||| Sbjct 2297 GAGCGGCAGCTGG 2285 >seq716 Length=1183 Score = 251 bits (278), Expect = 8e-62 Identities = 427/613 (70%), Gaps = 12/613 (2%) Strand=Plus/Minus Query 145668 GGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGAC 145727 ||| ||||| ||| ||| | ||||||||||| ||| ||||||||||| ||||| Sbjct 939 GGTGAGCTGCTGCTGCAGCGCGTCCACGTGGTTCTTGTACACGTGCGCGTCGCCCAGCGT 880 Query 145728 GTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGA 145787 |||||||| |||||||||| || ||||| | ||||| | | ||||| | || Sbjct 879 GTGGATGAGCTCCCCGGGCTTCAGCCCCGTCGCCTTGGCGATGAGGATAGTCAGGAAGGC 820 Query 145788 GTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTG 145847 ||| ||| |||||||||||||| || || |||||||| | ||||||||||||| Sbjct 819 GTACGAGGCGATGTTGAAGGGCACACCGAGGCCCATGTCGCAGCTGCGCTGGTACAGCAT 760 Query 145848 GCAGGAGAGCTCCCCGCCCG-------CCACGTAGAACTGGCACAGGAGGTGGCAGGGCG 145900 |||| |||| || || | |||||||||||||| ||||||||||| |||| Sbjct 759 GCAGCTCAGCT-CCTGCGTGTTGGGGTTCACGTAGAACTGGCCGAGGAGGTGGCACGGCG 701 Query 145901 GCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTG-CTC 145959 |||| ||||| | || | ||||||||||| || |||| || |||| | | | | Sbjct 700 GCAGCGCCATCTTGTCAAGCGCGGCCGGGTTCCACGCCGTGAAGAGCAGCCGGCGGTCGC 641 Query 145960 TCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGG 146019 | ||| ||| |||||| | | | | | | | ||| |||||| ||||||| || | Sbjct 640 T-GGGATTCGTCTTGAGCGTCTCGACGATGCGCTTGATCTGGTCGACGCCCTTGCCGTCG 582 Query 146020 TAATCTGTC-TTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGAC 146078 || | |||| ||| || | ||| |||| |||||||| | ||||||||| |||||||| Sbjct 581 TAGT-TGTCGTTGAAGGACGTGTAGTCGGCGCCGAAGTGGCGCCACTGGAAGCCGTAGAC 523 Query 146079 GGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGA 146138 ||||||||||||| || |||| || ||| | | |||||||| | ||| Sbjct 522 GGGCCCCAGGTCCATCTCTTCGTAGTGCGTGAGGCCGCGGCTGTCGAGGAAGGCGCGGCT 463 Query 146139 CCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCC 146198 |||||| |||||||||| | || |||| | | | |||| || | || || ||| Sbjct 462 GCCGTTGTCGTCCCAGATGTGGATGCCCTTGTCCGCGAGCAGCTTCGCGTTGGTCTCCCC 403 Query 146199 CCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAG 146258 | | |||||||| ||||| || || || | ||||||||| | ||| || || || Sbjct 402 GCGCAGGAACCAGATGAGCTCCTCCGACACGCCGCGCCAGAAGACGCGCTTCGTCGTGAG 343 Query 146259 CAGGGGGAACTGG 146271 || || | |||| Sbjct 342 GAGCGGCAGCTGG 330 >seq393 Length=3299 Score = 251 bits (278), Expect = 8e-62 Identities = 427/613 (70%), Gaps = 12/613 (2%) Strand=Plus/Minus Query 145668 GGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGAC 145727 ||| ||||| ||| ||| | ||||||||||| ||| ||||||||||| ||||| Sbjct 2155 GGTGAGCTGCTGCTGCAGCGCGTCCACGTGGTTCTTGTACACGTGCGCGTCGCCCAGCGT 2096 Query 145728 GTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGA 145787 |||||||| |||||||||| || ||||| | ||||| | | ||||| | || Sbjct 2095 GTGGATGAGCTCCCCGGGCTTCAGCCCCGTCGCCTTGGCGATGAGGATAGTCAGGAAGGC 2036 Query 145788 GTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTG 145847 ||| ||| |||||||||||||| || || |||||||| | ||||||||||||| Sbjct 2035 GTACGAGGCGATGTTGAAGGGCACACCGAGGCCCATGTCGCAGCTGCGCTGGTACAGCAT 1976 Query 145848 GCAGGAGAGCTCCCCGCCCG-------CCACGTAGAACTGGCACAGGAGGTGGCAGGGCG 145900 |||| |||| || || | |||||||||||||| ||||||||||| |||| Sbjct 1975 GCAGCTCAGCT-CCTGCGTGTTGGGGTTCACGTAGAACTGGCCGAGGAGGTGGCACGGCG 1917 Query 145901 GCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTG-CTC 145959 |||| ||||| | || | ||||||||||| || |||| || |||| | | | | Sbjct 1916 GCAGCGCCATCTTGTCAAGCGCGGCCGGGTTCCACGCCGTGAAGAGCAGCCGGCGGTCGC 1857 Query 145960 TCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGG 146019 | ||| ||| |||||| | | | | | | | ||| |||||| ||||||| || | Sbjct 1856 T-GGGATTCGTCTTGAGCGTCTCGACGATGCGCTTGATCTGGTCGACGCCCTTGCCGTCG 1798 Query 146020 TAATCTGTC-TTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGAC 146078 || | |||| ||| || | ||| |||| |||||||| | ||||||||| |||||||| Sbjct 1797 TAGT-TGTCGTTGAAGGACGTGTAGTCGGCGCCGAAGTGGCGCCACTGGAAGCCGTAGAC 1739 Query 146079 GGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGA 146138 ||||||||||||| || |||| || ||| | | |||||||| | ||| Sbjct 1738 GGGCCCCAGGTCCATCTCTTCGTAGTGCGTGAGGCCGCGGCTGTCGAGGAAGGCGCGGCT 1679 Query 146139 CCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCC 146198 |||||| |||||||||| | || |||| | | | |||| || | || || ||| Sbjct 1678 GCCGTTGTCGTCCCAGATGTGGATGCCCTTGTCCGCGAGCAGCTTCGCGTTGGTCTCCCC 1619 Query 146199 CCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAG 146258 | | |||||||| ||||| || || || | ||||||||| | ||| || || || Sbjct 1618 GCGCAGGAACCAGATGAGCTCCTCCGACACGCCGCGCCAGAAGACGCGCTTCGTCGTGAG 1559 Query 146259 CAGGGGGAACTGG 146271 || || | |||| Sbjct 1558 GAGCGGCAGCTGG 1546 >seq6110 Length=999 Score = 152 bits (168), Expect = 6e-32 Identities = 210/292 (72%), Gaps = 9/292 (3%) Strand=Plus/Minus Query 145668 GGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGAC 145727 ||| ||||| ||| ||| | ||||||||||| ||| ||||||||||| ||||| Sbjct 307 GGTGAGCTGCTGCTGCAGCGCGTCCACGTGGTTCTTGTACACGTGCGCGTCGCCCAGCGT 248 Query 145728 GTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGA 145787 |||||||| |||||||||| || ||||| | ||||| | | ||||| | || Sbjct 247 GTGGATGAGCTCCCCGGGCTTCAGCCCCGTCGCCTTGGCGATGAGGATAGTCAGGAAGGC 188 Query 145788 GTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTG 145847 ||| ||| |||||||||||||| || || |||||||| | ||||||||||||| Sbjct 187 GTACGAGGCGATGTTGAAGGGCACACCGAGGCCCATGTCGCAGCTGCGCTGGTACAGCAT 128 Query 145848 GCAGGAGAGCTCCCCGCCCG-------CCACGTAGAACTGGCACAGGAGGTGGCAGGGCG 145900 |||| |||| || || | |||||||||||||| ||||||||||| |||| Sbjct 127 GCAGCTCAGCT-CCTGCGTGTTGGGGTTCACGTAGAACTGGCCGAGGAGGTGGCACGGCG 69 Query 145901 GC-AGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCC 145951 || || ||||| | || | ||||||||||| || |||| || |||| Sbjct 68 GCTAGCGCCATCTTGTCAAGCGCGGCCGGGTTCCACGCCGTGAAGAGCAGCC 17 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589982594238880