Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000442495.1_202013-07-31] 12,772 sequences; 27,283,778 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq7561 125 6e-24 seq4861 125 6e-24 seq4920 122 7e-23 seq5572 98.7 8e-16 >seq7561 Length=2662 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| |||| || |||||||| || ||||| |||||||| Sbjct 2652 CCGCCGCGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 2593 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||||||||| || || ||| | || || | |||||||||| || Sbjct 2592 AGCGTACGGCCCTCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGG 2533 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| ||||| | ||| || || | | |||| Sbjct 2532 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 2473 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || || ||||||||||| | ||| || ||||| || ||||| Sbjct 2472 TCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACAAAGATCTGCAT 2426 >seq4861 Length=995 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| |||| ||||||||||| || ||||| |||||||| Sbjct 458 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 399 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||| ||||| ||||| ||| | || || | |||||||||| || Sbjct 398 AGCGTGCGGCCCTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGG 339 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| ||||| | ||| || || | | |||| Sbjct 338 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 279 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || || ||||||||||| | ||| || || || |||||||| Sbjct 278 TCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATTTGCAT 232 >seq4920 Length=845 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| |||| ||||||||||| || ||||| |||||||| Sbjct 532 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 591 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||| ||||| ||||| ||| | || || | |||||||||| || Sbjct 592 AGCGTGCGGCCCTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGG 651 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| ||||| ||| || || | | |||| Sbjct 652 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGCTCTCGATCGTGTCGCTCGCCTCCACC 711 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || || ||||||||||| | ||| || || || |||||||| Sbjct 712 TCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATTTGCAT 758 >seq5572 Length=1533 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | |||| ||||||||||| |||||||| |||||||| || || || | ||| Sbjct 863 AGCACGAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGCGAGCGTGCGGCCCTCC 804 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| ||||| || | || || | |||||||||| || | ||| |||||||| Sbjct 803 TCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 744 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | ||| || || | | ||| || | || || ||| Sbjct 743 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATCGTC 684 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| | || || || || || ||||| Sbjct 683 TTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422193471660752