Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000442495.1_202013-07-31] 12,772 sequences; 27,283,778 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq5572 138 1e-27 seq4861 113 4e-20 seq4920 109 5e-19 seq7561 107 2e-18 seq9151 84.2 2e-11 seq8268 84.2 2e-11 seq5779 84.2 2e-11 >seq5572 Length=1533 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| ||||| | | || ||| | ||| | || ||||| || ||||||||||| || Sbjct 879 ACCGCCGCGGAGGCGCAGCACGAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGC 820 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||||| ||||||||||| || |||||| ||||||| |||||||| || || || Sbjct 819 GAGCGTGCGGCCCTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGG 760 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 |||||||||||||| || || || || | |||| |||||| | |||||| Sbjct 759 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGAC 700 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| || | ||| |||||||||||||| || || || ||||||||| Sbjct 699 CTCGAGGGCGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATG 651 >seq4861 Length=995 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| ||||| | | || ||||| ||| | || ||||| || || |||||||| || Sbjct 459 ACCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGC 400 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||||| ||||||||||| || ||||| |||| || |||||||| || ||||| Sbjct 399 GAGCGTGCGGCCCTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGG 340 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 |||||||||||||| || || || || | |||| ||||| | ||| || Sbjct 339 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCAC 280 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 ||| | || | ||| ||||||||||| || || || || || ||||||| Sbjct 279 CTCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATTTGCATGG 230 >seq4920 Length=845 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| ||||| | | || ||||| ||| | || ||||| || || |||||||| || Sbjct 531 ACCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGC 590 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||||| ||||||||||| || ||||| |||| || |||||||| || ||||| Sbjct 591 GAGCGTGCGGCCCTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGG 650 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 |||||||||||||| || || || || |||| ||||| | ||| || Sbjct 651 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGCTCTCGATCGTGTCGCTCGCCTCCAC 710 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 ||| | || | ||| ||||||||||| || || || || || ||||||| Sbjct 711 CTCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATTTGCATGG 760 >seq7561 Length=2662 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || ||||| || || |||||||| || | || || ||||| Sbjct 2635 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTACGGCCCTCCTC 2576 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || ||||| |||| || |||||||| || ||||| |||||||||||||| Sbjct 2575 CAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG 2516 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| ||||| | ||| ||||| | || | ||| || Sbjct 2515 GATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGGGCGATCGTCTT 2456 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 ||||||||| || || ||||| |||||||||| Sbjct 2455 GCCGGTCAGCGTCTTCACAAAGATCTGCATGG 2424 >seq9151 Length=6141 Score = 84.2 bits (92), Expect = 2e-11 Identities = 162/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 134394 ATCAACGCGGACTCGTGTAGAGTCTTGTAAATGCCATCGACGCTGTCGTCCTTGATGCTT 134453 |||| ||| |||| | || || | ||| ||||| |||| |||||||||||| || Sbjct 2050 ATCACGGCGCACTCCTTCAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATCGCG 2109 Query 134454 TGCAGGAAACACGAACACATTTGTTGACGACGCGTACCCGCCGAAAACAGAGTCGGGCTC 134513 |||||| ||||| | ||| || | | ||||| || || || || ||| | Sbjct 2110 ACCAGGAAGCACGAGCTCATCTGCGGCTTGGGGGTACCGGCGTTGAAGAGCGTGGGGGTG 2169 Query 134514 GCGTGCGTAAAGGTGCCCAGACTCATCAACTGATATGTTTCAATGACGCTCTTAACGTCG 134573 |||||||| ||| |||| | ||| | | ||||| | ||||| || | ||| Sbjct 2170 GCGTGCGTGAAGAAGCCCTGCGACATGAGCATGTATGTGTTGCGGACGCGCTCCAGGTCC 2229 Query 134574 TCGCCGTGAATGGCCAGAGCGACGCGCATGAGCATGTGTTGGGGTCTCTCCATGATCAC 134632 | |||||| ||| | | || ||||||| || |||||| || || | ||||| |||||| Sbjct 2230 TTGCCGTGGATGCCAATCGCCACGCGCAGGATCATGTGCTGCGGACGCTCCACGATCAC 2288 >seq8268 Length=4088 Score = 84.2 bits (92), Expect = 2e-11 Identities = 162/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 134394 ATCAACGCGGACTCGTGTAGAGTCTTGTAAATGCCATCGACGCTGTCGTCCTTGATGCTT 134453 |||| ||| |||| | || || | ||| ||||| |||| |||||||||||| || Sbjct 1921 ATCACGGCGCACTCCTTCAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATCGCG 1980 Query 134454 TGCAGGAAACACGAACACATTTGTTGACGACGCGTACCCGCCGAAAACAGAGTCGGGCTC 134513 |||||| ||||| | ||| || | | ||||| || || || || ||| | Sbjct 1981 ACCAGGAAGCACGAGCTCATCTGCGGCTTGGGGGTACCGGCGTTGAAGAGCGTGGGGGTG 2040 Query 134514 GCGTGCGTAAAGGTGCCCAGACTCATCAACTGATATGTTTCAATGACGCTCTTAACGTCG 134573 |||||||| ||| |||| | ||| | | ||||| | ||||| || | ||| Sbjct 2041 GCGTGCGTGAAGAAGCCCTGCGACATGAGCATGTATGTGTTGCGGACGCGCTCCAGGTCC 2100 Query 134574 TCGCCGTGAATGGCCAGAGCGACGCGCATGAGCATGTGTTGGGGTCTCTCCATGATCAC 134632 | |||||| ||| | | || ||||||| || |||||| || || | ||||| |||||| Sbjct 2101 TTGCCGTGGATGCCAATCGCCACGCGCAGGATCATGTGCTGCGGACGCTCCACGATCAC 2159 >seq5779 Length=2238 Score = 84.2 bits (92), Expect = 2e-11 Identities = 162/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 134394 ATCAACGCGGACTCGTGTAGAGTCTTGTAAATGCCATCGACGCTGTCGTCCTTGATGCTT 134453 |||| ||| |||| | || || | ||| ||||| |||| |||||||||||| || Sbjct 318 ATCACGGCGCACTCCTTCAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATCGCG 259 Query 134454 TGCAGGAAACACGAACACATTTGTTGACGACGCGTACCCGCCGAAAACAGAGTCGGGCTC 134513 |||||| ||||| | ||| || | | ||||| || || || || ||| | Sbjct 258 ACCAGGAAGCACGAGCTCATCTGCGGCTTGGGGGTACCGGCGTTGAAGAGCGTGGGGGTG 199 Query 134514 GCGTGCGTAAAGGTGCCCAGACTCATCAACTGATATGTTTCAATGACGCTCTTAACGTCG 134573 |||||||| ||| |||| | ||| | | ||||| | ||||| || | ||| Sbjct 198 GCGTGCGTGAAGAAGCCCTGCGACATGAGCATGTATGTGTTGCGGACGCGCTCCAGGTCC 139 Query 134574 TCGCCGTGAATGGCCAGAGCGACGCGCATGAGCATGTGTTGGGGTCTCTCCATGATCAC 134632 | |||||| ||| | | || ||||||| || |||||| || || | ||||| |||||| Sbjct 138 TTGCCGTGGATGCCAATCGCCACGCGCAGGATCATGTGCTGCGGACGCTCCACGATCAC 80 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433762870502224