Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000442495.1_202013-07-31] 12,772 sequences; 27,283,778 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq5572 127 2e-24 seq4920 127 2e-24 seq4861 127 2e-24 seq7561 123 3e-23 >seq5572 Length=1533 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||| | |||| ||| |||||| ||||| ||||| || || || || || | Sbjct 866 CGCAGCACGAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGCGAGCGTGCGGCCC 807 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| |||||||| ||||| ||||||||||| | ||| | || ||||||| Sbjct 806 TCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 747 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || || | || | | |||||||||| || || |||| | ||| Sbjct 746 TCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATC 687 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || || ||||| || ||||| ||||| Sbjct 686 GTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 652 >seq4920 Length=845 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| ||| |||||| || || ||||| || || || || || | Sbjct 544 CGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCC 603 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| ||||| || || || ||||||||||| | || | || ||||||| Sbjct 604 TCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTG 663 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || || | || | | ||||||||||| ||||| || | | ||| Sbjct 664 TCCTGGATCTTCGCCTTCACGCTCTCGATCGTGTCGCTCGCCTCCACCTCCAGGGCGATC 723 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || |||||||| || ||||||||||| Sbjct 724 GTCTTGCCGGTCAGCGTCTTCACGAAGATTTGCAT 758 >seq4861 Length=995 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| ||| |||||| || || ||||| || || || || || | Sbjct 446 CGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCC 387 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| ||||| || || || ||||||||||| | || | || ||||||| Sbjct 386 TCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTG 327 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || || | || | | ||||||||||| ||||| || | | ||| Sbjct 326 TCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGGGCGATC 267 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || |||||||| || ||||||||||| Sbjct 266 GTCTTGCCGGTCAGCGTCTTCACGAAGATTTGCAT 232 >seq7561 Length=2662 Score = 123 bits (136), Expect = 3e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||||| |||| || |||||| || || ||||| || || || || || | Sbjct 2641 ACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTACGGCC 2582 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||||||||| || || || ||||||||||| | || | || |||||| Sbjct 2581 CTCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTT 2522 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| || || | || | | ||||||||||| ||||| || | | ||| Sbjct 2521 GTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGGGCGAT 2462 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || |||||||| |||||||| ||||| Sbjct 2461 CGTCTTGCCGGTCAGCGTCTTCACAAAGATCTGCAT 2426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571726309320160