Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000442495.1_202013-07-31] 12,772 sequences; 27,283,778 total letters Query= NC_002671.1 Length=15179 Score E Sequences producing significant alignments: (Bits) Value seq9393 82.4 7e-12 seq9028 82.4 7e-12 seq5164 82.4 7e-12 seq8190 80.6 3e-11 >seq9393 Length=2441 Score = 82.4 bits (90), Expect = 7e-12 Identities = 99/134 (74%), Gaps = 3/134 (2%) Strand=Plus/Plus Query 14529 GGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATCACTTCAGAAGAAGGC 14588 ||||| ||||| ||||| || | | |||||| ||||| ||||| ||| |||| | ||| Sbjct 349 GGAACTGTAAAGTGGTTCAATGATGCTAAAGGTTTTGGGTTTATTACTCCAGATAACGGC 408 Query 14589 A---AAGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAATCACTTGAT 14645 | || | || |||||||||||| |||| ||| ||||| || ||| |||| | Sbjct 409 GGGGAGGAGATATTTGCTCACTTCTCATCAATTCAAATGGATGGTTTTAAAACACTAAAA 468 Query 14646 GAAGGTCAAAAAGT 14659 |||||||| ||||| Sbjct 469 GAAGGTCAGAAAGT 482 >seq9028 Length=9075 Score = 82.4 bits (90), Expect = 7e-12 Identities = 99/134 (74%), Gaps = 3/134 (2%) Strand=Plus/Plus Query 14529 GGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATCACTTCAGAAGAAGGC 14588 ||||| ||||| ||||| || | | |||||| ||||| ||||| ||| |||| | ||| Sbjct 3915 GGAACTGTAAAGTGGTTCAATGATGCTAAAGGTTTTGGGTTTATTACTCCAGATAACGGC 3974 Query 14589 A---AAGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAATCACTTGAT 14645 | || | || |||||||||||| |||| ||| ||||| || ||| |||| | Sbjct 3975 GGGGAGGAGATATTTGCTCACTTCTCATCAATTCAAATGGATGGTTTTAAAACACTAAAA 4034 Query 14646 GAAGGTCAAAAAGT 14659 |||||||| ||||| Sbjct 4035 GAAGGTCAGAAAGT 4048 >seq5164 Length=1353 Score = 82.4 bits (90), Expect = 7e-12 Identities = 99/134 (74%), Gaps = 3/134 (2%) Strand=Plus/Minus Query 14529 GGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATCACTTCAGAAGAAGGC 14588 ||||| ||||| ||||| || | | |||||| ||||| ||||| ||| |||| | ||| Sbjct 1303 GGAACTGTAAAGTGGTTCAATGATGCTAAAGGTTTTGGGTTTATTACTCCAGATAACGGC 1244 Query 14589 A---AAGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAATCACTTGAT 14645 | || | || |||||||||||| |||| ||| ||||| || ||| |||| | Sbjct 1243 GGGGAGGAGATATTTGCTCACTTCTCATCAATTCAAATGGATGGTTTTAAAACACTAAAA 1184 Query 14646 GAAGGTCAAAAAGT 14659 |||||||| ||||| Sbjct 1183 GAAGGTCAGAAAGT 1170 >seq8190 Length=1256 Score = 80.6 bits (88), Expect = 3e-11 Identities = 100/135 (74%), Gaps = 4/135 (3%) Strand=Plus/Minus Query 14529 GGAACAGTAAAA-TGGTTTAACGCAGATAAAGGATTTGGCTTTATCACTTCAGAAGAAGG 14587 ||||| |||||| ||||| || | | |||||| ||||| ||||| ||| |||| | || Sbjct 1240 GGAACTGTAAAAGTGGTTCAATGATGCTAAAGGTTTTGGGTTTATTACTCCAGATAACGG 1181 Query 14588 CA---AAGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAATCACTTGA 14644 | | || | || |||||||||||| |||| ||| ||||| || ||| |||| | Sbjct 1180 CGGGGAGGAGATATTTGCTCACTTCTCATCAATTCAAATGGATGGTTTTAAAACACTAAA 1121 Query 14645 TGAAGGTCAAAAAGT 14659 |||||||| ||||| Sbjct 1120 AGAAGGTCAGAAAGT 1106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 48447244435912