Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000442495.1_202013-07-31] 12,772 sequences; 27,283,778 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq4130 129 5e-25 seq2683 129 5e-25 seq716 129 5e-25 seq393 129 5e-25 seq6110 114 1e-20 >seq4130 Length=3478 Score = 129 bits (142), Expect = 5e-25 Identities = 288/429 (67%), Gaps = 14/429 (3%) Strand=Plus/Minus Query 20913 AGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGC 20972 ||||| || |||| | || |||||||| ||||| ||||| ||||| |||| ||||| Sbjct 2731 AGCTGCTGCTGCAGCGCGTCCACGTGGTTCTTGTACACGTGCGCGTCGCCCAGCGTGTGG 2672 Query 20973 ACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAG-ATACGTCAGGAGGGCGTA 21031 | | || || || |||| ||||| | | ||||| || ||| ||||||| |||||| Sbjct 2671 ATGAGCTCCCCGGGCTTCAGCCCCGTCGCCTTGGCGATGAGGATA-GTCAGGAAGGCGTA 2613 Query 21032 GCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCA 21091 ||||||||| || || || ||||||||||||||| | | |||||||||| ||| Sbjct 2612 CGAGGCGATGTTGAAGGGCACACCGAGGCCCATGTCGCAGCTGCGCTGGTACAGCATGCA 2553 Query 21092 GGACAGCTCCCCC------CGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAG 21145 | ||||||| | | |||||| ||||| | | | ||| || || || || Sbjct 2552 GCTCAGCTCCTGCGTGTTGGGGTTCACGTAGAACTGGCCGAGGAGGTGGCACGGCGGCAG 2493 Query 21146 AGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGG 21205 |||||| | || | || ||||||||||| | | | || || ||| ||| Sbjct 2492 CGCCATCTTGTCAAGCGCGGCCGGGTTCCACGCCGTGAAGAGCAGCCGGCGGTCGCTGGG 2433 Query 21206 CCGCCTGTTAATTAGATCCACCACGTAACGC---AGCTGGTCCACCCCCTGACCCTCGTA 21262 | | | | || | | ||| ||| | |||||| || |||| || ||||| Sbjct 2432 ATTCGTCT---TGAGCGTCTCGACGATGCGCTTGATCTGGTCGACGCCCTTGCCGTCGTA 2376 Query 21263 GTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGG 21322 |||| ||| | | |||| || || || || || | ||||||||| ||||| || || Sbjct 2375 GTTGTCGTTGAAGGACGTGTAGTCGGCGCCGAAGTGGCGCCACTGGAAGCCGTAGACGGG 2316 Query 21323 CCCCAGATC 21331 |||||| || Sbjct 2315 CCCCAGGTC 2307 >seq2683 Length=3852 Score = 129 bits (142), Expect = 5e-25 Identities = 288/429 (67%), Gaps = 14/429 (3%) Strand=Plus/Minus Query 20913 AGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGC 20972 ||||| || |||| | || |||||||| ||||| ||||| ||||| |||| ||||| Sbjct 2890 AGCTGCTGCTGCAGCGCGTCCACGTGGTTCTTGTACACGTGCGCGTCGCCCAGCGTGTGG 2831 Query 20973 ACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAG-ATACGTCAGGAGGGCGTA 21031 | | || || || |||| ||||| | | ||||| || ||| ||||||| |||||| Sbjct 2830 ATGAGCTCCCCGGGCTTCAGCCCCGTCGCCTTGGCGATGAGGATA-GTCAGGAAGGCGTA 2772 Query 21032 GCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCA 21091 ||||||||| || || || ||||||||||||||| | | |||||||||| ||| Sbjct 2771 CGAGGCGATGTTGAAGGGCACACCGAGGCCCATGTCGCAGCTGCGCTGGTACAGCATGCA 2712 Query 21092 GGACAGCTCCCCC------CGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAG 21145 | ||||||| | | |||||| ||||| | | | ||| || || || || Sbjct 2711 GCTCAGCTCCTGCGTGTTGGGGTTCACGTAGAACTGGCCGAGGAGGTGGCACGGCGGCAG 2652 Query 21146 AGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGG 21205 |||||| | || | || ||||||||||| | | | || || ||| ||| Sbjct 2651 CGCCATCTTGTCAAGCGCGGCCGGGTTCCACGCCGTGAAGAGCAGCCGGCGGTCGCTGGG 2592 Query 21206 CCGCCTGTTAATTAGATCCACCACGTAACGC---AGCTGGTCCACCCCCTGACCCTCGTA 21262 | | | | || | | ||| ||| | |||||| || |||| || ||||| Sbjct 2591 ATTCGTCT---TGAGCGTCTCGACGATGCGCTTGATCTGGTCGACGCCCTTGCCGTCGTA 2535 Query 21263 GTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGG 21322 |||| ||| | | |||| || || || || || | ||||||||| ||||| || || Sbjct 2534 GTTGTCGTTGAAGGACGTGTAGTCGGCGCCGAAGTGGCGCCACTGGAAGCCGTAGACGGG 2475 Query 21323 CCCCAGATC 21331 |||||| || Sbjct 2474 CCCCAGGTC 2466 >seq716 Length=1183 Score = 129 bits (142), Expect = 5e-25 Identities = 288/429 (67%), Gaps = 14/429 (3%) Strand=Plus/Minus Query 20913 AGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGC 20972 ||||| || |||| | || |||||||| ||||| ||||| ||||| |||| ||||| Sbjct 935 AGCTGCTGCTGCAGCGCGTCCACGTGGTTCTTGTACACGTGCGCGTCGCCCAGCGTGTGG 876 Query 20973 ACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAG-ATACGTCAGGAGGGCGTA 21031 | | || || || |||| ||||| | | ||||| || ||| ||||||| |||||| Sbjct 875 ATGAGCTCCCCGGGCTTCAGCCCCGTCGCCTTGGCGATGAGGATA-GTCAGGAAGGCGTA 817 Query 21032 GCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCA 21091 ||||||||| || || || ||||||||||||||| | | |||||||||| ||| Sbjct 816 CGAGGCGATGTTGAAGGGCACACCGAGGCCCATGTCGCAGCTGCGCTGGTACAGCATGCA 757 Query 21092 GGACAGCTCCCCC------CGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAG 21145 | ||||||| | | |||||| ||||| | | | ||| || || || || Sbjct 756 GCTCAGCTCCTGCGTGTTGGGGTTCACGTAGAACTGGCCGAGGAGGTGGCACGGCGGCAG 697 Query 21146 AGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGG 21205 |||||| | || | || ||||||||||| | | | || || ||| ||| Sbjct 696 CGCCATCTTGTCAAGCGCGGCCGGGTTCCACGCCGTGAAGAGCAGCCGGCGGTCGCTGGG 637 Query 21206 CCGCCTGTTAATTAGATCCACCACGTAACGC---AGCTGGTCCACCCCCTGACCCTCGTA 21262 | | | | || | | ||| ||| | |||||| || |||| || ||||| Sbjct 636 ATTCGTCT---TGAGCGTCTCGACGATGCGCTTGATCTGGTCGACGCCCTTGCCGTCGTA 580 Query 21263 GTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGG 21322 |||| ||| | | |||| || || || || || | ||||||||| ||||| || || Sbjct 579 GTTGTCGTTGAAGGACGTGTAGTCGGCGCCGAAGTGGCGCCACTGGAAGCCGTAGACGGG 520 Query 21323 CCCCAGATC 21331 |||||| || Sbjct 519 CCCCAGGTC 511 >seq393 Length=3299 Score = 129 bits (142), Expect = 5e-25 Identities = 288/429 (67%), Gaps = 14/429 (3%) Strand=Plus/Minus Query 20913 AGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGC 20972 ||||| || |||| | || |||||||| ||||| ||||| ||||| |||| ||||| Sbjct 2151 AGCTGCTGCTGCAGCGCGTCCACGTGGTTCTTGTACACGTGCGCGTCGCCCAGCGTGTGG 2092 Query 20973 ACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAG-ATACGTCAGGAGGGCGTA 21031 | | || || || |||| ||||| | | ||||| || ||| ||||||| |||||| Sbjct 2091 ATGAGCTCCCCGGGCTTCAGCCCCGTCGCCTTGGCGATGAGGATA-GTCAGGAAGGCGTA 2033 Query 21032 GCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCA 21091 ||||||||| || || || ||||||||||||||| | | |||||||||| ||| Sbjct 2032 CGAGGCGATGTTGAAGGGCACACCGAGGCCCATGTCGCAGCTGCGCTGGTACAGCATGCA 1973 Query 21092 GGACAGCTCCCCC------CGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAG 21145 | ||||||| | | |||||| ||||| | | | ||| || || || || Sbjct 1972 GCTCAGCTCCTGCGTGTTGGGGTTCACGTAGAACTGGCCGAGGAGGTGGCACGGCGGCAG 1913 Query 21146 AGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGG 21205 |||||| | || | || ||||||||||| | | | || || ||| ||| Sbjct 1912 CGCCATCTTGTCAAGCGCGGCCGGGTTCCACGCCGTGAAGAGCAGCCGGCGGTCGCTGGG 1853 Query 21206 CCGCCTGTTAATTAGATCCACCACGTAACGC---AGCTGGTCCACCCCCTGACCCTCGTA 21262 | | | | || | | ||| ||| | |||||| || |||| || ||||| Sbjct 1852 ATTCGTCT---TGAGCGTCTCGACGATGCGCTTGATCTGGTCGACGCCCTTGCCGTCGTA 1796 Query 21263 GTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGG 21322 |||| ||| | | |||| || || || || || | ||||||||| ||||| || || Sbjct 1795 GTTGTCGTTGAAGGACGTGTAGTCGGCGCCGAAGTGGCGCCACTGGAAGCCGTAGACGGG 1736 Query 21323 CCCCAGATC 21331 |||||| || Sbjct 1735 CCCCAGGTC 1727 >seq6110 Length=999 Score = 114 bits (126), Expect = 1e-20 Identities = 141/190 (74%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 20913 AGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGC 20972 ||||| || |||| | || |||||||| ||||| ||||| ||||| |||| ||||| Sbjct 303 AGCTGCTGCTGCAGCGCGTCCACGTGGTTCTTGTACACGTGCGCGTCGCCCAGCGTGTGG 244 Query 20973 ACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAG-ATACGTCAGGAGGGCGTA 21031 | | || || || |||| ||||| | | ||||| || ||| ||||||| |||||| Sbjct 243 ATGAGCTCCCCGGGCTTCAGCCCCGTCGCCTTGGCGATGAGGATA-GTCAGGAAGGCGTA 185 Query 21032 GCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCA 21091 ||||||||| || || || ||||||||||||||| | | |||||||||| ||| Sbjct 184 CGAGGCGATGTTGAAGGGCACACCGAGGCCCATGTCGCAGCTGCGCTGGTACAGCATGCA 125 Query 21092 GGACAGCTCC 21101 | ||||||| Sbjct 124 GCTCAGCTCC 115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427709412922560