Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000442495.1_202013-07-31] 12,772 sequences; 27,283,778 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq4861 91.5 1e-13 seq9151 87.8 2e-12 seq8268 87.8 2e-12 seq6883 87.8 2e-12 seq5779 87.8 2e-12 seq5572 87.8 2e-12 seq4920 87.8 2e-12 >seq4861 Length=995 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || ||| || | || || ||||| | | | Sbjct 232 ATGCAAATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCCCTGGAGGTGGAGGCGAGC 291 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || || || ||||||||||| || || || || || Sbjct 292 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 351 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| ||||| ||| | ||||| |||||| || | || |||||| Sbjct 352 CAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGAGGGCCGCACGCTCGCGGACTACAAC 411 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || ||||| | || | || |||| ||||||| ||| Sbjct 412 ATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGT 459 >seq9151 Length=6141 Score = 87.8 bits (96), Expect = 2e-12 Identities = 264/401 (66%), Gaps = 9/401 (2%) Strand=Plus/Plus Query 129998 TCCACATTCCATC-CGCTTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTAC 130056 ||||| | || || | |||| || || ||||| || | || || | ||| || ||||| Sbjct 1727 TCCACTTGCCCTCACTCTTC-ACGCGCTTCATGAAGAGGTCCGGGATCCAGAGCGCGTAG 1785 Query 130057 AACAAATCTCGCGCTTTTCTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCG 130116 || | || ||||| ||||| || |||| || |||| ||||| ||| Sbjct 1786 AAGAGGTCGCGCGCGCGCTGGTCCTCCTTGCCAGTGTTGCGCTTCATGAGCAGGAACTCG 1845 Query 130117 TAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTT---GCCC 130173 | ||||||||||||||||| || | || || || | |||||||| || || ||| Sbjct 1846 AAGATGTCGGCGTGCCACGGCTCGAGGTACATGGCGAAGGCGCCCTTGCGCTTACCGCCG 1905 Query 130174 CCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTG 130233 || || ||||||| ||| | | ||||| | || || | ||| | | | ||||| Sbjct 1906 CCCTGATCAACGTAGCGGGCCGTGTTGTTCCACACGCGGATCATCGGCATGAGGCCGTTC 1965 Query 130234 GCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGA 130293 | ||||||||| |||| | | ||| | ||||| || || | ||| || | | Sbjct 1966 GACGTGCCGTTGGTGCCCGCGATGTAGCTGCCGGCCGCGCGGATGTTGTGGATATGGATG 2025 Query 130294 CCTATGCCGCC-GCCAAATT-TTGATATCAACGCGCAATCGCGTAGCGTTTCATAAATGC 130351 || |||||||| ||| || || |||| ||||| || ||||| || || |||| Sbjct 2026 CCAATGCCGCCAGCCGCCTTGCTG--ATCACGGCGCACTCCTTCAGCGTGTCGTAGATGC 2083 Query 130352 CAACGATACTGTCTTCTTTAATGTTTAGGAGGAAACACGAG 130392 | |||| ||||| || || || | ||||| |||||| Sbjct 2084 CCTCGATGCTGTCGTCCTTCATCGCGACCAGGAAGCACGAG 2124 >seq8268 Length=4088 Score = 87.8 bits (96), Expect = 2e-12 Identities = 264/401 (66%), Gaps = 9/401 (2%) Strand=Plus/Plus Query 129998 TCCACATTCCATC-CGCTTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTAC 130056 ||||| | || || | |||| || || ||||| || | || || | ||| || ||||| Sbjct 1598 TCCACTTGCCCTCACTCTTC-ACGCGCTTCATGAAGAGGTCCGGGATCCAGAGCGCGTAG 1656 Query 130057 AACAAATCTCGCGCTTTTCTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCG 130116 || | || ||||| ||||| || |||| || |||| ||||| ||| Sbjct 1657 AAGAGGTCGCGCGCGCGCTGGTCCTCCTTGCCAGTGTTGCGCTTCATGAGCAGGAACTCG 1716 Query 130117 TAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTT---GCCC 130173 | ||||||||||||||||| || | || || || | |||||||| || || ||| Sbjct 1717 AAGATGTCGGCGTGCCACGGCTCGAGGTACATGGCGAAGGCGCCCTTGCGCTTACCGCCG 1776 Query 130174 CCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTG 130233 || || ||||||| ||| | | ||||| | || || | ||| | | | ||||| Sbjct 1777 CCCTGATCAACGTAGCGGGCCGTGTTGTTCCACACGCGGATCATCGGCATGAGGCCGTTC 1836 Query 130234 GCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGA 130293 | ||||||||| |||| | | ||| | ||||| || || | ||| || | | Sbjct 1837 GACGTGCCGTTGGTGCCCGCGATGTAGCTGCCGGCCGCGCGGATGTTGTGGATATGGATG 1896 Query 130294 CCTATGCCGCC-GCCAAATT-TTGATATCAACGCGCAATCGCGTAGCGTTTCATAAATGC 130351 || |||||||| ||| || || |||| ||||| || ||||| || || |||| Sbjct 1897 CCAATGCCGCCAGCCGCCTTGCTG--ATCACGGCGCACTCCTTCAGCGTGTCGTAGATGC 1954 Query 130352 CAACGATACTGTCTTCTTTAATGTTTAGGAGGAAACACGAG 130392 | |||| ||||| || || || | ||||| |||||| Sbjct 1955 CCTCGATGCTGTCGTCCTTCATCGCGACCAGGAAGCACGAG 1995 >seq6883 Length=2519 Score = 87.8 bits (96), Expect = 2e-12 Identities = 264/401 (66%), Gaps = 9/401 (2%) Strand=Plus/Minus Query 129998 TCCACATTCCATC-CGCTTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTAC 130056 ||||| | || || | |||| || || ||||| || | || || | ||| || ||||| Sbjct 537 TCCACTTGCCCTCACTCTTC-ACGCGCTTCATGAAGAGGTCCGGGATCCAGAGCGCGTAG 479 Query 130057 AACAAATCTCGCGCTTTTCTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCG 130116 || | || ||||| ||||| || |||| || |||| ||||| ||| Sbjct 478 AAGAGGTCGCGCGCGCGCTGGTCCTCCTTGCCAGTGTTGCGCTTCATGAGCAGGAACTCG 419 Query 130117 TAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTT---GCCC 130173 | ||||||||||||||||| || | || || || | |||||||| || || ||| Sbjct 418 AAGATGTCGGCGTGCCACGGCTCGAGGTACATGGCGAAGGCGCCCTTGCGCTTACCGCCG 359 Query 130174 CCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTG 130233 || || ||||||| ||| | | ||||| | || || | ||| | | | ||||| Sbjct 358 CCCTGATCAACGTAGCGGGCCGTGTTGTTCCACACGCGGATCATCGGCATGAGGCCGTTC 299 Query 130234 GCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGA 130293 | ||||||||| |||| | | ||| | ||||| || || | ||| || | | Sbjct 298 GACGTGCCGTTGGTGCCCGCGATGTAGCTGCCGGCCGCGCGGATGTTGTGGATATGGATG 239 Query 130294 CCTATGCCGCC-GCCAAATT-TTGATATCAACGCGCAATCGCGTAGCGTTTCATAAATGC 130351 || |||||||| ||| || || |||| ||||| || ||||| || || |||| Sbjct 238 CCAATGCCGCCAGCCGCCTTGCTG--ATCACGGCGCACTCCTTCAGCGTGTCGTAGATGC 181 Query 130352 CAACGATACTGTCTTCTTTAATGTTTAGGAGGAAACACGAG 130392 | |||| ||||| || || || | ||||| |||||| Sbjct 180 CCTCGATGCTGTCGTCCTTCATCGCGACCAGGAAGCACGAG 140 >seq5779 Length=2238 Score = 87.8 bits (96), Expect = 2e-12 Identities = 264/401 (66%), Gaps = 9/401 (2%) Strand=Plus/Minus Query 129998 TCCACATTCCATC-CGCTTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTAC 130056 ||||| | || || | |||| || || ||||| || | || || | ||| || ||||| Sbjct 641 TCCACTTGCCCTCACTCTTC-ACGCGCTTCATGAAGAGGTCCGGGATCCAGAGCGCGTAG 583 Query 130057 AACAAATCTCGCGCTTTTCTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCG 130116 || | || ||||| ||||| || |||| || |||| ||||| ||| Sbjct 582 AAGAGGTCGCGCGCGCGCTGGTCCTCCTTGCCAGTGTTGCGCTTCATGAGCAGGAACTCG 523 Query 130117 TAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTT---GCCC 130173 | ||||||||||||||||| || | || || || | |||||||| || || ||| Sbjct 522 AAGATGTCGGCGTGCCACGGCTCGAGGTACATGGCGAAGGCGCCCTTGCGCTTACCGCCG 463 Query 130174 CCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTG 130233 || || ||||||| ||| | | ||||| | || || | ||| | | | ||||| Sbjct 462 CCCTGATCAACGTAGCGGGCCGTGTTGTTCCACACGCGGATCATCGGCATGAGGCCGTTC 403 Query 130234 GCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGA 130293 | ||||||||| |||| | | ||| | ||||| || || | ||| || | | Sbjct 402 GACGTGCCGTTGGTGCCCGCGATGTAGCTGCCGGCCGCGCGGATGTTGTGGATATGGATG 343 Query 130294 CCTATGCCGCC-GCCAAATT-TTGATATCAACGCGCAATCGCGTAGCGTTTCATAAATGC 130351 || |||||||| ||| || || |||| ||||| || ||||| || || |||| Sbjct 342 CCAATGCCGCCAGCCGCCTTGCTG--ATCACGGCGCACTCCTTCAGCGTGTCGTAGATGC 285 Query 130352 CAACGATACTGTCTTCTTTAATGTTTAGGAGGAAACACGAG 130392 | |||| ||||| || || || | ||||| |||||| Sbjct 284 CCTCGATGCTGTCGTCCTTCATCGCGACCAGGAAGCACGAG 244 >seq5572 Length=1533 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | ||||| || ||| || | || || || || | | | Sbjct 652 ATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACGATCGCCCTCGAGGTCGAGGCGAGC 711 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || ||||||||||| || || || || || Sbjct 712 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 771 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | ||||| |||||| || | || |||||| Sbjct 772 CAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGAGGGCCGCACGCTCGCGGACTACAAC 831 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || ||||| | || | || |||| | ||||| ||| Sbjct 832 ATTCAGAAGGAGTCCACGCTGCACCTCGTGCTGCGCCTCCGCGGCGGT 879 >seq4920 Length=845 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || ||| || | || || ||||| | | | Sbjct 758 ATGCAAATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCCCTGGAGGTGGAGGCGAGC 699 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | || || || || ||||||||||| || || || || || Sbjct 698 GACACGATCGAGAGCGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 639 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| ||||| ||| | ||||| |||||| || | || |||||| Sbjct 638 CAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGAGGGCCGCACGCTCGCGGACTACAAC 579 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || ||||| | || | || |||| ||||||| ||| Sbjct 578 ATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGT 531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419662665664180