Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000442495.1_202013-07-31] 12,772 sequences; 27,283,778 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq7561 102 7e-17 seq5572 102 7e-17 seq4861 82.4 6e-11 >seq7561 Length=2662 Score = 102 bits (112), Expect = 7e-17 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 ||| || || || || |||||||| || | ||||| || || || || ||||| Sbjct 2623 CGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTACGGCCCTCCTCCAGCTGCTTACC 2564 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| |||| || ||||| ||||||||||| ||||| || ||||| ||||| || Sbjct 2563 AGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTT 2504 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | || | |||||| | | || || |||| || | ||| ||||||||||| || Sbjct 2503 CACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGGGCGATCGTCTTGCCGGTCAGCGT 2444 Query 114365 TTTTACAAAAATCTGCATGGCTTAATTATT 114394 || ||||| |||||||||| |||||||| Sbjct 2443 CTTCACAAAGATCTGCATGG--TAATTATT 2416 >seq5572 Length=1533 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 |||||| || || | || || | || | ||| || || || ||||||||||| || Sbjct 879 ACCGCCGCGGAGGCGCAGCACGAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGC 820 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | || || || || || || || |||||| ||||||| ||||| |||||||| || Sbjct 819 GAGCGTGCGGCCCTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGG 760 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||||| || ||||| ||||| || | | || | ||||||| | | ||||| Sbjct 759 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGAC 700 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || | || | ||| |||||||||||||| || || || ||||||||| Sbjct 699 CTCGAGGGCGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATG 651 >seq4861 Length=995 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 |||||| || || | || || | || | ||| || || || || |||||||| || Sbjct 459 ACCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGC 400 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | || || || || || || || ||||| |||| || ||||| ||||||||||| Sbjct 399 GAGCGTGCGGCCCTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGG 340 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||||| || ||||| ||||| || | | || | |||||| | | || || Sbjct 339 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCAC 280 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 114384 |||| || | ||| ||||||||||| || || || || || ||||||| Sbjct 279 CTCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATTTGCATGG 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420069002404464