Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000442495.1_202013-07-31] 12,772 sequences; 27,283,778 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq7588 149 1e-30 seq2261 149 1e-30 seq8084 143 6e-29 seq7142 143 6e-29 seq6878 143 6e-29 seq5725 143 6e-29 seq2337 143 6e-29 seq2156 143 6e-29 >seq7588 Length=1600 Score = 149 bits (164), Expect = 1e-30 Identities = 293/431 (68%), Gaps = 7/431 (2%) Strand=Plus/Plus Query 243295 GAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCC 243354 ||||| ||| ||| || | | ||| || || || | || ||||| |||||| || Sbjct 682 GAGCGGCTCATCGGCTTCGCGGCCGTCGAGGGCATCTTCTTCTCCGGCTCCTTCTGCTCC 741 Query 243355 ATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATC 243414 ||||| ||||| ||| || |||||||| |||||| | |||||| ||||| Sbjct 742 ATCTTCTGGCTCAAGAAGCGCGGCGTGATGCCCGGCCTCACCTTCAGCAACGAGCTCATC 801 Query 243415 AGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAA-AGCTCCA--- 243470 |||||||||||||| ||| | |||| || |||| ||| |||| || Sbjct 802 TCGCGCGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTA--CAACAGCTACATCA 859 Query 243471 -GAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAA 243529 | ||||||| || ||| || | |||||||| || || || | | ||| | Sbjct 860 AGCACAAGCTGCCGCGCGAGCGCGTGCTGGACATCATCACCGACGCCGTCGTCATCGAGA 919 Query 243530 AGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGG 243589 |||| ||||| |||||||| | || || || || ||||||||| | || |||||| Sbjct 920 AGGAGTTCATCTGCGACGCGCTGCCCGTGCGCCTCATCGGCATGAACGCCGACCTCATGA 979 Query 243590 GACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGT 243649 | ||||||||||| ||||| || |||||| | || | |||| || ||||| | Sbjct 980 GCCAGTACATCGAGTTCGTCGCGGACCGCCTGCTCGTGTCGCTGGGCCTGGAGAAGCACT 1039 Query 243650 ACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACT 243709 ||||||||| |||||||| | ||| |||||| | || || || || || || |||| Sbjct 1040 ACAACTCCACCAACCCCTTCGACTTCATGGAGATGATCTCCCTCACCGGCAAGACCAACT 1099 Query 243710 TCTTCGAAAAG 243720 ||||||| ||| Sbjct 1100 TCTTCGAGAAG 1110 >seq2261 Length=1262 Score = 149 bits (164), Expect = 1e-30 Identities = 293/431 (68%), Gaps = 7/431 (2%) Strand=Plus/Plus Query 243295 GAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCC 243354 ||||| ||| ||| || | | ||| || || || | || ||||| |||||| || Sbjct 647 GAGCGGCTCATCGGCTTCGCGGCCGTCGAGGGCATCTTCTTCTCCGGCTCCTTCTGCTCC 706 Query 243355 ATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATC 243414 ||||| ||||| ||| || |||||||| |||||| | |||||| ||||| Sbjct 707 ATCTTCTGGCTCAAGAAGCGCGGCGTGATGCCCGGCCTCACCTTCAGCAACGAGCTCATC 766 Query 243415 AGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAA-AGCTCCA--- 243470 |||||||||||||| ||| | |||| || |||| ||| |||| || Sbjct 767 TCGCGCGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTA--CAACAGCTACATCA 824 Query 243471 -GAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAA 243529 | ||||||| || ||| || | |||||||| || || || | | ||| | Sbjct 825 AGCACAAGCTGCCGCGCGAGCGCGTGCTGGACATCATCACCGACGCCGTCGTCATCGAGA 884 Query 243530 AGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGG 243589 |||| ||||| |||||||| | || || || || ||||||||| | || |||||| Sbjct 885 AGGAGTTCATCTGCGACGCGCTGCCCGTGCGCCTCATCGGCATGAACGCCGACCTCATGA 944 Query 243590 GACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGT 243649 | ||||||||||| ||||| || |||||| | || | |||| || ||||| | Sbjct 945 GCCAGTACATCGAGTTCGTCGCGGACCGCCTGCTCGTGTCGCTGGGCCTGGAGAAGCACT 1004 Query 243650 ACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACT 243709 ||||||||| |||||||| | ||| |||||| | || || || || || || |||| Sbjct 1005 ACAACTCCACCAACCCCTTCGACTTCATGGAGATGATCTCCCTCACCGGCAAGACCAACT 1064 Query 243710 TCTTCGAAAAG 243720 ||||||| ||| Sbjct 1065 TCTTCGAGAAG 1075 >seq8084 Length=1321 Score = 143 bits (158), Expect = 6e-29 Identities = 292/431 (68%), Gaps = 7/431 (2%) Strand=Plus/Minus Query 243295 GAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCC 243354 ||||| ||| ||| || | | ||| || || || | || ||||| |||||| || Sbjct 902 GAGCGGCTCATCGGCTTCGCGGCCGTCGAGGGCATCTTCTTCTCCGGCTCCTTCTGCTCC 843 Query 243355 ATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATC 243414 ||||| ||||| ||| || |||||||| |||||| | |||||| ||||| Sbjct 842 ATCTTCTGGCTCAAGAAGCGCGGCGTGATGCCCGGCCTCACCTTCAGCAACGAGCTCATC 783 Query 243415 AGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAA-AGC----TCC 243469 |||||||||||||| ||| | |||| || |||| ||| ||| || Sbjct 782 TCGCGCGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTA--CAACAGCCACATCA 725 Query 243470 AGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAA 243529 | ||||||| || ||| || | |||||||| || || || | | ||| | Sbjct 724 AACACAAGCTGCCGCGCGAGCGCGTGCTGGACATCATCACCGACGCCGTCGTCATCGAGA 665 Query 243530 AGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGG 243589 |||| ||||| |||||||| | || || || || ||||||||| | || |||||| Sbjct 664 AGGAGTTCATCTGCGACGCGCTGCCCGTGCGCCTCATCGGCATGAACGCCGACCTCATGA 605 Query 243590 GACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGT 243649 | ||||||||||| ||||| || |||||| | || | |||| || ||||| | Sbjct 604 GCCAGTACATCGAGTTCGTCGCGGACCGCCTGCTCGTGTCGCTGGGCCTGGAGAAGCACT 545 Query 243650 ACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACT 243709 ||||||||| |||||||| | ||| |||||| | || || || || || || |||| Sbjct 544 ACAACTCCACCAACCCCTTCGACTTCATGGAGATGATCTCCCTCACCGGCAAGACCAACT 485 Query 243710 TCTTCGAAAAG 243720 ||||||| ||| Sbjct 484 TCTTCGAGAAG 474 >seq7142 Length=1074 Score = 143 bits (158), Expect = 6e-29 Identities = 292/431 (68%), Gaps = 7/431 (2%) Strand=Plus/Minus Query 243295 GAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCC 243354 ||||| ||| ||| || | | ||| || || || | || ||||| |||||| || Sbjct 817 GAGCGGCTCATCGGCTTCGCGGCCGTCGAGGGCATCTTCTTCTCCGGCTCCTTCTGCTCC 758 Query 243355 ATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATC 243414 ||||| ||||| ||| || |||||||| |||||| | |||||| ||||| Sbjct 757 ATCTTCTGGCTCAAGAAGCGCGGCGTGATGCCCGGCCTCACCTTCAGCAACGAGCTCATC 698 Query 243415 AGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAA-AGC----TCC 243469 |||||||||||||| ||| | |||| || |||| ||| ||| || Sbjct 697 TCGCGCGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTA--CAACAGCCACATCA 640 Query 243470 AGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAA 243529 | ||||||| || ||| || | |||||||| || || || | | ||| | Sbjct 639 AACACAAGCTGCCGCGCGAGCGCGTGCTGGACATCATCACCGACGCCGTCGTCATCGAGA 580 Query 243530 AGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGG 243589 |||| ||||| |||||||| | || || || || ||||||||| | || |||||| Sbjct 579 AGGAGTTCATCTGCGACGCGCTGCCCGTGCGCCTCATCGGCATGAACGCCGACCTCATGA 520 Query 243590 GACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGT 243649 | ||||||||||| ||||| || |||||| | || | |||| || ||||| | Sbjct 519 GCCAGTACATCGAGTTCGTCGCGGACCGCCTGCTCGTGTCGCTGGGCCTGGAGAAGCACT 460 Query 243650 ACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACT 243709 ||||||||| |||||||| | ||| |||||| | || || || || || || |||| Sbjct 459 ACAACTCCACCAACCCCTTCGACTTCATGGAGATGATCTCCCTCACCGGCAAGACCAACT 400 Query 243710 TCTTCGAAAAG 243720 ||||||| ||| Sbjct 399 TCTTCGAGAAG 389 >seq6878 Length=4371 Score = 143 bits (158), Expect = 6e-29 Identities = 292/431 (68%), Gaps = 7/431 (2%) Strand=Plus/Plus Query 243295 GAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCC 243354 ||||| ||| ||| || | | ||| || || || | || ||||| |||||| || Sbjct 2082 GAGCGGCTCATCGGCTTCGCGGCCGTCGAGGGCATCTTCTTCTCCGGCTCCTTCTGCTCC 2141 Query 243355 ATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATC 243414 ||||| ||||| ||| || |||||||| |||||| | |||||| ||||| Sbjct 2142 ATCTTCTGGCTCAAGAAGCGCGGCGTGATGCCCGGCCTCACCTTCAGCAACGAGCTCATC 2201 Query 243415 AGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAA-AGC----TCC 243469 |||||||||||||| ||| | |||| || |||| ||| ||| || Sbjct 2202 TCGCGCGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTA--CAACAGCCACATCA 2259 Query 243470 AGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAA 243529 | ||||||| || ||| || | |||||||| || || || | | ||| | Sbjct 2260 AACACAAGCTGCCGCGCGAGCGCGTGCTGGACATCATCACCGACGCCGTCGTCATCGAGA 2319 Query 243530 AGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGG 243589 |||| ||||| |||||||| | || || || || ||||||||| | || |||||| Sbjct 2320 AGGAGTTCATCTGCGACGCGCTGCCCGTGCGCCTCATCGGCATGAACGCCGACCTCATGA 2379 Query 243590 GACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGT 243649 | ||||||||||| ||||| || |||||| | || | |||| || ||||| | Sbjct 2380 GCCAGTACATCGAGTTCGTCGCGGACCGCCTGCTCGTGTCGCTGGGCCTGGAGAAGCACT 2439 Query 243650 ACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACT 243709 ||||||||| |||||||| | ||| |||||| | || || || || || || |||| Sbjct 2440 ACAACTCCACCAACCCCTTCGACTTCATGGAGATGATCTCCCTCACCGGCAAGACCAACT 2499 Query 243710 TCTTCGAAAAG 243720 ||||||| ||| Sbjct 2500 TCTTCGAGAAG 2510 >seq5725 Length=2234 Score = 143 bits (158), Expect = 6e-29 Identities = 292/431 (68%), Gaps = 7/431 (2%) Strand=Plus/Plus Query 243295 GAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCC 243354 ||||| ||| ||| || | | ||| || || || | || ||||| |||||| || Sbjct 1088 GAGCGGCTCATCGGCTTCGCGGCCGTCGAGGGCATCTTCTTCTCCGGCTCCTTCTGCTCC 1147 Query 243355 ATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATC 243414 ||||| ||||| ||| || |||||||| |||||| | |||||| ||||| Sbjct 1148 ATCTTCTGGCTCAAGAAGCGCGGCGTGATGCCCGGCCTCACCTTCAGCAACGAGCTCATC 1207 Query 243415 AGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAA-AGC----TCC 243469 |||||||||||||| ||| | |||| || |||| ||| ||| || Sbjct 1208 TCGCGCGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTA--CAACAGCCACATCA 1265 Query 243470 AGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAA 243529 | ||||||| || ||| || | |||||||| || || || | | ||| | Sbjct 1266 AACACAAGCTGCCGCGCGAGCGCGTGCTGGACATCATCACCGACGCCGTCGTCATCGAGA 1325 Query 243530 AGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGG 243589 |||| ||||| |||||||| | || || || || ||||||||| | || |||||| Sbjct 1326 AGGAGTTCATCTGCGACGCGCTGCCCGTGCGCCTCATCGGCATGAACGCCGACCTCATGA 1385 Query 243590 GACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGT 243649 | ||||||||||| ||||| || |||||| | || | |||| || ||||| | Sbjct 1386 GCCAGTACATCGAGTTCGTCGCGGACCGCCTGCTCGTGTCGCTGGGCCTGGAGAAGCACT 1445 Query 243650 ACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACT 243709 ||||||||| |||||||| | ||| |||||| | || || || || || || |||| Sbjct 1446 ACAACTCCACCAACCCCTTCGACTTCATGGAGATGATCTCCCTCACCGGCAAGACCAACT 1505 Query 243710 TCTTCGAAAAG 243720 ||||||| ||| Sbjct 1506 TCTTCGAGAAG 1516 >seq2337 Length=1647 Score = 143 bits (158), Expect = 6e-29 Identities = 292/431 (68%), Gaps = 7/431 (2%) Strand=Plus/Minus Query 243295 GAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCC 243354 ||||| ||| ||| || | | ||| || || || | || ||||| |||||| || Sbjct 849 GAGCGGCTCATCGGCTTCGCGGCCGTCGAGGGCATCTTCTTCTCCGGCTCCTTCTGCTCC 790 Query 243355 ATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATC 243414 ||||| ||||| ||| || |||||||| |||||| | |||||| ||||| Sbjct 789 ATCTTCTGGCTCAAGAAGCGCGGCGTGATGCCCGGCCTCACCTTCAGCAACGAGCTCATC 730 Query 243415 AGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAA-AGC----TCC 243469 |||||||||||||| ||| | |||| || |||| ||| ||| || Sbjct 729 TCGCGCGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTA--CAACAGCCACATCA 672 Query 243470 AGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAA 243529 | ||||||| || ||| || | |||||||| || || || | | ||| | Sbjct 671 AACACAAGCTGCCGCGCGAGCGCGTGCTGGACATCATCACCGACGCCGTCGTCATCGAGA 612 Query 243530 AGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGG 243589 |||| ||||| |||||||| | || || || || ||||||||| | || |||||| Sbjct 611 AGGAGTTCATCTGCGACGCGCTGCCCGTGCGCCTCATCGGCATGAACGCCGACCTCATGA 552 Query 243590 GACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGT 243649 | ||||||||||| ||||| || |||||| | || | |||| || ||||| | Sbjct 551 GCCAGTACATCGAGTTCGTCGCGGACCGCCTGCTCGTGTCGCTGGGCCTGGAGAAGCACT 492 Query 243650 ACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACT 243709 ||||||||| |||||||| | ||| |||||| | || || || || || || |||| Sbjct 491 ACAACTCCACCAACCCCTTCGACTTCATGGAGATGATCTCCCTCACCGGCAAGACCAACT 432 Query 243710 TCTTCGAAAAG 243720 ||||||| ||| Sbjct 431 TCTTCGAGAAG 421 >seq2156 Length=1716 Score = 143 bits (158), Expect = 6e-29 Identities = 292/431 (68%), Gaps = 7/431 (2%) Strand=Plus/Plus Query 243295 GAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCC 243354 ||||| ||| ||| || | | ||| || || || | || ||||| |||||| || Sbjct 949 GAGCGGCTCATCGGCTTCGCGGCCGTCGAGGGCATCTTCTTCTCCGGCTCCTTCTGCTCC 1008 Query 243355 ATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATC 243414 ||||| ||||| ||| || |||||||| |||||| | |||||| ||||| Sbjct 1009 ATCTTCTGGCTCAAGAAGCGCGGCGTGATGCCCGGCCTCACCTTCAGCAACGAGCTCATC 1068 Query 243415 AGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAA-AGC----TCC 243469 |||||||||||||| ||| | |||| || |||| ||| ||| || Sbjct 1069 TCGCGCGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTA--CAACAGCCACATCA 1126 Query 243470 AGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAA 243529 | ||||||| || ||| || | |||||||| || || || | | ||| | Sbjct 1127 AACACAAGCTGCCGCGCGAGCGCGTGCTGGACATCATCACCGACGCCGTCGTCATCGAGA 1186 Query 243530 AGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGG 243589 |||| ||||| |||||||| | || || || || ||||||||| | || |||||| Sbjct 1187 AGGAGTTCATCTGCGACGCGCTGCCCGTGCGCCTCATCGGCATGAACGCCGACCTCATGA 1246 Query 243590 GACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGT 243649 | ||||||||||| ||||| || |||||| | || | |||| || ||||| | Sbjct 1247 GCCAGTACATCGAGTTCGTCGCGGACCGCCTGCTCGTGTCGCTGGGCCTGGAGAAGCACT 1306 Query 243650 ACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACT 243709 ||||||||| |||||||| | ||| |||||| | || || || || || || |||| Sbjct 1307 ACAACTCCACCAACCCCTTCGACTTCATGGAGATGATCTCCCTCACCGGCAAGACCAACT 1366 Query 243710 TCTTCGAAAAG 243720 ||||||| ||| Sbjct 1367 TCTTCGAGAAG 1377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102699523338200