Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000442495.1_202013-07-31] 12,772 sequences; 27,283,778 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq7115 87.8 2e-12 seq8084 86.0 7e-12 seq7588 86.0 7e-12 seq7142 86.0 7e-12 seq6878 86.0 7e-12 seq5725 86.0 7e-12 seq2337 86.0 7e-12 seq2261 86.0 7e-12 seq2156 86.0 7e-12 >seq7115 Length=2817 Score = 87.8 bits (96), Expect = 2e-12 Identities = 249/374 (67%), Gaps = 14/374 (4%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 ||||| ||||| ||||| || | | |||| |||||| ||||| | |||||| ||| Sbjct 1402 CGATCAAAACGCCCTGGACGCAACAAAGCAGGATCAAGTATATCTGGTCTGTTTGTGGCG 1461 Query 11563 GCAATGACTACAATGCCA-GTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTT 11621 || || || |||| || ||| || || || || |||||||| | | || || Sbjct 1462 GCTATTACGACAACACCTTGTC-CAGCCTCAAACCCATCCATTTCAACCAACATTTGATT 1520 Query 11622 GATCGTCTGTTCACGCTCATCGTTGGAGGGCATAC--CACCTGCCGAACGCTTCTTACCG 11679 | || ||||||||||| || || | | | | ||||||| |||| ||| Sbjct 1521 TAATGTTTGTTCACGCTCGTCATT--ACCACCTCCAACACCTGCTCCTCGCTGACGACCA 1578 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACA---CGGTTGGTTGGCACGTGCCTGTTCG 11736 ||||| ||||||||||| || || | ||||| || || || ||| | || Sbjct 1579 ACAGCATCAATCTCATCTATAAAAATAATACATGGCGAATGTTT---TTTTGCATTATCA 1635 Query 11737 AAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCA 11796 || | || | |||||| || ||||| || || ||||| ||||| || | | || Sbjct 1636 AACATATCCCTTACACGAGAAGCGCCAACTCCAACAAACATTTCAACAAAATCAGAACCA 1695 Query 11797 GA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTT 11855 || | ||| || ||| |||||||||| |||||| || | |||| ||| || | ||| || Sbjct 1696 GAGATACT-AAAGAAAGGAACATTAGCCTCACCTGCAACTGCTCTAGCCAGCAAAGTTTT 1754 Query 11856 ACCCGTACCAGGTG 11869 || || || |||| Sbjct 1755 TCCTGTTCCCGGTG 1768 >seq8084 Length=1321 Score = 86.0 bits (94), Expect = 7e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||||| || || ||||| | || Sbjct 763 TGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAAGGTGAGGCCGGGCATCACGCCG 822 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||| || || || || |||||||||||||| || Sbjct 823 CGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGACGGCC 882 Query 119628 GCGAAAGCGAATAGACGCT-CAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 ||||| ||| || |||| | | || | || | || ||| ||| | ||||| Sbjct 883 GCGAAGCCGATGAGCCGCTCCTGGAAGCTGGCG-GCGCTGCCGATCCAGCGCACGGCCCA 941 Query 119687 GTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725 ||||||||| || |||||||||| || |||||||| Sbjct 942 GTTGGCCTTCTTCTGGATGCAGGGGATGGTCTGGATGGC 980 >seq7588 Length=1600 Score = 86.0 bits (94), Expect = 7e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||||| || || ||||| | || Sbjct 821 TGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAAGGTGAGGCCGGGCATCACGCCG 762 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||| || || || || |||||||||||||| || Sbjct 761 CGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGACGGCC 702 Query 119628 GCGAAAGCGAATAGACGCT-CAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 ||||| ||| || |||| | | || | || | || ||| ||| | ||||| Sbjct 701 GCGAAGCCGATGAGCCGCTCCTGGAAGCTGGCG-GCGCTGCCGATCCAGCGCACGGCCCA 643 Query 119687 GTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725 ||||||||| || |||||||||| || |||||||| Sbjct 642 GTTGGCCTTCTTCTGGATGCAGGGGATGGTCTGGATGGC 604 >seq7142 Length=1074 Score = 86.0 bits (94), Expect = 7e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||||| || || ||||| | || Sbjct 678 TGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAAGGTGAGGCCGGGCATCACGCCG 737 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||| || || || || |||||||||||||| || Sbjct 738 CGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGACGGCC 797 Query 119628 GCGAAAGCGAATAGACGCT-CAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 ||||| ||| || |||| | | || | || | || ||| ||| | ||||| Sbjct 798 GCGAAGCCGATGAGCCGCTCCTGGAAGCTGGCG-GCGCTGCCGATCCAGCGCACGGCCCA 856 Query 119687 GTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725 ||||||||| || |||||||||| || |||||||| Sbjct 857 GTTGGCCTTCTTCTGGATGCAGGGGATGGTCTGGATGGC 895 >seq6878 Length=4371 Score = 86.0 bits (94), Expect = 7e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||||| || || ||||| | || Sbjct 2221 TGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAAGGTGAGGCCGGGCATCACGCCG 2162 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||| || || || || |||||||||||||| || Sbjct 2161 CGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGACGGCC 2102 Query 119628 GCGAAAGCGAATAGACGCT-CAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 ||||| ||| || |||| | | || | || | || ||| ||| | ||||| Sbjct 2101 GCGAAGCCGATGAGCCGCTCCTGGAAGCTGGCG-GCGCTGCCGATCCAGCGCACGGCCCA 2043 Query 119687 GTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725 ||||||||| || |||||||||| || |||||||| Sbjct 2042 GTTGGCCTTCTTCTGGATGCAGGGGATGGTCTGGATGGC 2004 >seq5725 Length=2234 Score = 86.0 bits (94), Expect = 7e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||||| || || ||||| | || Sbjct 1227 TGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAAGGTGAGGCCGGGCATCACGCCG 1168 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||| || || || || |||||||||||||| || Sbjct 1167 CGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGACGGCC 1108 Query 119628 GCGAAAGCGAATAGACGCT-CAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 ||||| ||| || |||| | | || | || | || ||| ||| | ||||| Sbjct 1107 GCGAAGCCGATGAGCCGCTCCTGGAAGCTGGCG-GCGCTGCCGATCCAGCGCACGGCCCA 1049 Query 119687 GTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725 ||||||||| || |||||||||| || |||||||| Sbjct 1048 GTTGGCCTTCTTCTGGATGCAGGGGATGGTCTGGATGGC 1010 >seq2337 Length=1647 Score = 86.0 bits (94), Expect = 7e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||||| || || ||||| | || Sbjct 710 TGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAAGGTGAGGCCGGGCATCACGCCG 769 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||| || || || || |||||||||||||| || Sbjct 770 CGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGACGGCC 829 Query 119628 GCGAAAGCGAATAGACGCT-CAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 ||||| ||| || |||| | | || | || | || ||| ||| | ||||| Sbjct 830 GCGAAGCCGATGAGCCGCTCCTGGAAGCTGGCG-GCGCTGCCGATCCAGCGCACGGCCCA 888 Query 119687 GTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725 ||||||||| || |||||||||| || |||||||| Sbjct 889 GTTGGCCTTCTTCTGGATGCAGGGGATGGTCTGGATGGC 927 >seq2261 Length=1262 Score = 86.0 bits (94), Expect = 7e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||||| || || ||||| | || Sbjct 786 TGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAAGGTGAGGCCGGGCATCACGCCG 727 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||| || || || || |||||||||||||| || Sbjct 726 CGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGACGGCC 667 Query 119628 GCGAAAGCGAATAGACGCT-CAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 ||||| ||| || |||| | | || | || | || ||| ||| | ||||| Sbjct 666 GCGAAGCCGATGAGCCGCTCCTGGAAGCTGGCG-GCGCTGCCGATCCAGCGCACGGCCCA 608 Query 119687 GTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725 ||||||||| || |||||||||| || |||||||| Sbjct 607 GTTGGCCTTCTTCTGGATGCAGGGGATGGTCTGGATGGC 569 >seq2156 Length=1716 Score = 86.0 bits (94), Expect = 7e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||||| || || ||||| | || Sbjct 1088 TGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAAGGTGAGGCCGGGCATCACGCCG 1029 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||| || || || || |||||||||||||| || Sbjct 1028 CGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGACGGCC 969 Query 119628 GCGAAAGCGAATAGACGCT-CAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 ||||| ||| || |||| | | || | || | || ||| ||| | ||||| Sbjct 968 GCGAAGCCGATGAGCCGCTCCTGGAAGCTGGCG-GCGCTGCCGATCCAGCGCACGGCCCA 910 Query 119687 GTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725 ||||||||| || |||||||||| || |||||||| Sbjct 909 GTTGGCCTTCTTCTGGATGCAGGGGATGGTCTGGATGGC 871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588881969981600