Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000442495.1_202013-07-31] 12,772 sequences; 27,283,778 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq7561 96.9 2e-15 seq5572 93.3 3e-14 seq4920 84.2 1e-11 seq4861 84.2 1e-11 >seq7561 Length=2662 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||| || | || | || |||||||| || || ||||| Sbjct 2616 TCCTTCTGGATGTTGTAGTCCGCGAGCGTACGGCCCTCCTCCAGCTGCTTACCAGCAAAG 2557 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||| || ||| Sbjct 2556 ATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTC 2497 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | ||||| || || | || || || || || || || ||||||||| Sbjct 2496 TCGATCGTGTCGCTCGCCTCCACCTCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACA 2437 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 2436 AAGATCTGCAT 2426 >seq5572 Length=1533 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||||| || | || | || || ||||| || || || || Sbjct 842 TCCTTCTGAATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCGAGCTGCTTGCCAGCGAAG 783 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| ||||| || ||| Sbjct 782 ATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTC 723 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||||| || |||| || || || || || || ||||||||||| Sbjct 722 TCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATCGTCTTGCCGGTCAGAGTCTTCACG 663 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 662 AAGATCTGCAT 652 >seq4920 Length=845 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||||| || | || | || || Sbjct 550 ACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCG 609 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || || |||||||| | || | ||||||||||| Sbjct 610 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGG 669 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| || ||| | |||| || | ||||| || || | || || || || Sbjct 670 ATCTTCGCCTTCACGCTCTCGATCGTGTCGCTCGCCTCCACCTCCAGGGCGATCGTCTTG 729 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || |||||||| ||||| ||||| Sbjct 730 CCGGTCAGCGTCTTCACGAAGATTTGCAT 758 >seq4861 Length=995 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||||| || | || | || || Sbjct 440 ACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCG 381 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || || |||||||| | || | ||||||||||| Sbjct 380 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGG 321 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| || ||| | |||| || | ||||| || || | || || || || Sbjct 320 ATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGGGCGATCGTCTTG 261 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || |||||||| ||||| ||||| Sbjct 260 CCGGTCAGCGTCTTCACGAAGATTTGCAT 232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324583067939616