Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000442495.1_202013-07-31] 12,772 sequences; 27,283,778 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq9219 156 3e-32 seq7463 156 3e-32 seq7322 156 3e-32 >seq9219 Length=2396 Score = 156 bits (172), Expect = 3e-32 Identities = 212/296 (72%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 552303 GATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATC 552362 |||||||| || |||||||||| |||| || | || ||| | ||||| || | || Sbjct 1448 GATGTTACACCATTATCTCTTGGCATAGAGACTCTAGGTGGTGTAATGACAAAGATGATA 1507 Query 552363 GATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAAT 552422 | | ||| || |||||||| | | |||| || |||||||| | ||||||| Sbjct 1508 CAGAAAAACACAACTATTCCAACAAGATTTTCTCAAGTTTTTTCTACTGCTGAAGATAAT 1567 Query 552423 CAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAAT 552482 || || |||||||||| |||||| | |||||||| || || | || | ||||| Sbjct 1568 CAGCCTTCTGTTACAATAAAAATTTATCAAGGAGAACGAGAAATAGCTTCTGGGAATAAG 1627 Query 552483 CAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATT 552542 || || |||||||||||||| || ||||| | | |||||| |||||||||| Sbjct 1628 GCTCTCGGGGAGTTTAATTTAGAAGGCATACCTCCATCCTCACGTGGAATACCGCAAATA 1687 Query 552543 GAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 ||||| || || ||||| ||||||||||| |||||| |||| ||||| ||||| Sbjct 1688 GAAGTAACATTTGATATTGATGCCAATGGTATTTTGCATGTTTCTGCTAAGGATAA 1743 Score = 114 bits (126), Expect = 1e-19 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 550352 AAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACT 550411 ||||||||| ||||||| | || | | || ||||||| || ||||| || |||||| Sbjct 632 AAAATGAAAAAAACAGCAGAGGATTATTTAGGAGAAGAAGTAACTGATGCTGTTATAACT 691 Query 550412 GTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCT 550471 || |||||||| ||||| || ||| | ||||| || ||||||||||| | || || Sbjct 692 GTGCCAGCATACTTTAACGATAGTCAAAGACAAGCGACAAAAGATGCTGGCAGGATAGCA 751 Query 550472 GGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTT 550531 || ||||| ||| | ||||| || ||||| |||||||| || || || | ||| | Sbjct 752 GGGCTTAACGTTAAGAGGATTATAAACGAACCGACTGCTGCAGCGCTAGCTTTTGGTTTA 811 Query 550532 GATAAA 550537 |||||| Sbjct 812 GATAAA 817 >seq7463 Length=3513 Score = 156 bits (172), Expect = 3e-32 Identities = 212/296 (72%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 552303 GATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATC 552362 |||||||| || |||||||||| |||| || | || ||| | ||||| || | || Sbjct 3427 GATGTTACACCATTATCTCTTGGCATAGAGACTCTAGGTGGTGTAATGACAAAGATGATA 3368 Query 552363 GATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAAT 552422 | | ||| || |||||||| | | |||| || |||||||| | ||||||| Sbjct 3367 CAGAAAAACACAACTATTCCAACAAGATTTTCTCAAGTTTTTTCTACTGCTGAAGATAAT 3308 Query 552423 CAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAAT 552482 || || |||||||||| |||||| | |||||||| || || | || | ||||| Sbjct 3307 CAGCCTTCTGTTACAATAAAAATTTATCAAGGAGAACGAGAAATAGCTTCTGGGAATAAG 3248 Query 552483 CAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATT 552542 || || |||||||||||||| || ||||| | | |||||| |||||||||| Sbjct 3247 GCTCTCGGGGAGTTTAATTTAGAAGGCATACCTCCATCCTCACGTGGAATACCGCAAATA 3188 Query 552543 GAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 ||||| || || ||||| ||||||||||| |||||| |||| ||||| ||||| Sbjct 3187 GAAGTAACATTTGATATTGATGCCAATGGTATTTTGCATGTTTCTGCTAAGGATAA 3132 >seq7322 Length=2437 Score = 156 bits (172), Expect = 3e-32 Identities = 212/296 (72%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 552303 GATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATC 552362 |||||||| || |||||||||| |||| || | || ||| | ||||| || | || Sbjct 1508 GATGTTACACCATTATCTCTTGGCATAGAGACTCTAGGTGGTGTAATGACAAAGATGATA 1567 Query 552363 GATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAAT 552422 | | ||| || |||||||| | | |||| || |||||||| | ||||||| Sbjct 1568 CAGAAAAACACAACTATTCCAACAAGATTTTCTCAAGTTTTTTCTACTGCTGAAGATAAT 1627 Query 552423 CAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAAT 552482 || || |||||||||| |||||| | |||||||| || || | || | ||||| Sbjct 1628 CAGCCTTCTGTTACAATAAAAATTTATCAAGGAGAACGAGAAATAGCTTCTGGGAATAAG 1687 Query 552483 CAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATT 552542 || || |||||||||||||| || ||||| | | |||||| |||||||||| Sbjct 1688 GCTCTCGGGGAGTTTAATTTAGAAGGCATACCTCCATCCTCACGTGGAATACCGCAAATA 1747 Query 552543 GAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 ||||| || || ||||| ||||||||||| |||||| |||| ||||| ||||| Sbjct 1748 GAAGTAACATTTGATATTGATGCCAATGGTATTTTGCATGTTTCTGCTAAGGATAA 1803 Score = 114 bits (126), Expect = 1e-19 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 550352 AAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACT 550411 ||||||||| ||||||| | || | | || ||||||| || ||||| || |||||| Sbjct 692 AAAATGAAAAAAACAGCAGAGGATTATTTAGGAGAAGAAGTAACTGATGCTGTTATAACT 751 Query 550412 GTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCT 550471 || |||||||| ||||| || ||| | ||||| || ||||||||||| | || || Sbjct 752 GTGCCAGCATACTTTAACGATAGTCAAAGACAAGCGACAAAAGATGCTGGCAGGATAGCA 811 Query 550472 GGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTT 550531 || ||||| ||| | ||||| || ||||| |||||||| || || || | ||| | Sbjct 812 GGGCTTAACGTTAAGAGGATTATAAACGAACCGACTGCTGCAGCGCTAGCTTTTGGTTTA 871 Query 550532 GATAAA 550537 |||||| Sbjct 872 GATAAA 877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028620559038280