Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000442495.1_202013-07-31] 12,772 sequences; 27,283,778 total letters Query= NC_018874.1 Length=211518 Score E Sequences producing significant alignments: (Bits) Value seq5790 109 7e-19 seq307 109 7e-19 >seq5790 Length=1559 Score = 109 bits (120), Expect = 7e-19 Identities = 206/301 (68%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 197027 CCTCGTCGCTAAAGCCCGTACCGATCTTACAAATGGATTCGTACA--TCTGGTTGTCGGG 197084 ||||||| ||||||||| || ||||| || ||||||| |||| || | || | | Sbjct 1219 CCTCGTCCTGAAAGCCCGTGCCAATCTTGCAGATGGATTGGTACTCGTCCGATT--CCGC 1162 Query 197085 ATTGTAACAGGCGAGTAAGAAAGCGCCGTAGGTTCCCGTTCTCTTTCCCACCCCGTTGAA 197144 || ||| || || || | ||| |||| || |||| | ||||||| ||||| ||| Sbjct 1161 ATCGTAGCACGCCAGCAGGAAGCCGCCCAAGACACCCGCCCGCTTTCCCTTCCCGTAGAA 1102 Query 197145 GCCTCCGATAACCACCAGATCCAGAGTGTCGCACACCCCTTCCATGTAATCTTTCTTCAG 197204 | | ||||| ||||| || || |||||| || || |||||||| || |||||||| Sbjct 1101 GGCGCCGATGGGCACCAAGTCGAGCGTGTCGGTGACGCCGTCCATGTAGTCCTTCTTCAG 1042 Query 197205 TTTGAGCCAGCTTCTAGATCTCTTGGCAATCTCGTAGGTTGCGTTTACGTCCAGGGTCTT 197264 || |||||| || | ||| || | ||| || || | | ||||| ||||| Sbjct 1041 CTTCAGCCAGAAGTGGGAGCGCTTTGCGGGCGTGTACGTCGCCTCCTCCTCCAGCGTCTT 982 Query 197265 GATCATCAATCCCTCGCAATCTTCCTTCACGGCCTTGTTCATGAAAGTTTGAATGTCTTC 197324 |||||||| |||||||| | || | | || || || ||| |||| ||||| || Sbjct 981 GATCATCAGGCCCTCGCAGCCGGCCGCGATCGACTGGTCCAGGAACTTTTGGATGTCCTC 922 Query 197325 C 197325 | Sbjct 921 C 921 >seq307 Length=3128 Score = 109 bits (120), Expect = 7e-19 Identities = 206/301 (68%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 197027 CCTCGTCGCTAAAGCCCGTACCGATCTTACAAATGGATTCGTACA--TCTGGTTGTCGGG 197084 ||||||| ||||||||| || ||||| || ||||||| |||| || | || | | Sbjct 2023 CCTCGTCCTGAAAGCCCGTGCCAATCTTGCAGATGGATTGGTACTCGTCCGATT--CCGC 1966 Query 197085 ATTGTAACAGGCGAGTAAGAAAGCGCCGTAGGTTCCCGTTCTCTTTCCCACCCCGTTGAA 197144 || ||| || || || | ||| |||| || |||| | ||||||| ||||| ||| Sbjct 1965 ATCGTAGCACGCCAGCAGGAAGCCGCCCAAGACACCCGCCCGCTTTCCCTTCCCGTAGAA 1906 Query 197145 GCCTCCGATAACCACCAGATCCAGAGTGTCGCACACCCCTTCCATGTAATCTTTCTTCAG 197204 | | ||||| ||||| || || |||||| || || |||||||| || |||||||| Sbjct 1905 GGCGCCGATGGGCACCAAGTCGAGCGTGTCGGTGACGCCGTCCATGTAGTCCTTCTTCAG 1846 Query 197205 TTTGAGCCAGCTTCTAGATCTCTTGGCAATCTCGTAGGTTGCGTTTACGTCCAGGGTCTT 197264 || |||||| || | ||| || | ||| || || | | ||||| ||||| Sbjct 1845 CTTCAGCCAGAAGTGGGAGCGCTTTGCGGGCGTGTACGTCGCCTCCTCCTCCAGCGTCTT 1786 Query 197265 GATCATCAATCCCTCGCAATCTTCCTTCACGGCCTTGTTCATGAAAGTTTGAATGTCTTC 197324 |||||||| |||||||| | || | | || || || ||| |||| ||||| || Sbjct 1785 GATCATCAGGCCCTCGCAGCCGGCCGCGATCGACTGGTCCAGGAACTTTTGGATGTCCTC 1726 Query 197325 C 197325 | Sbjct 1725 C 1725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 676621560119360