Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000442495.1_202013-07-31] 12,772 sequences; 27,283,778 total letters Query= NC_019405.1 Length=215710 Score E Sequences producing significant alignments: (Bits) Value seq4432 188 1e-42 seq3961 188 1e-42 seq3719 183 4e-41 seq5035 86.0 9e-12 >seq4432 Length=1001 Score = 188 bits (208), Expect = 1e-42 Identities = 520/784 (66%), Gaps = 41/784 (5%) Strand=Plus/Minus Query 136638 CATGGCCT-AGCCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGT 136696 ||| |||| | |||||||| || || | ||| ||||| ||| | ||||| || | Sbjct 825 CATCGCCTTATCCCTTCACACACAGTATTTGATTGAGCACTGCGACCACCTCCACAAGCT 766 Query 136697 CCTTCTGGGCCTCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATCA 136756 ||| || || | |||||| || ||||||||||||||||| || |||| |||| || Sbjct 765 CCTCTTGTGCATGCATGACGGCATCGATGTCCTTGTAGGCGGCGGGTGTTTCATCGAGCA 706 Query 136757 CGCCAGCGTCCTTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGTGA 136816 |||| |||||||||||||||||||| |||| |||||| | ||||| |||| |||| Sbjct 705 CGCCGGCGTCCTTGCGGCACTCCACTCCCTGAGTGGCCGCCACGTGGTCGGCCAGCGTGA 646 Query 136817 AG-GTCGCCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACGAGCAG 136875 || | ||| | | | | || || | || || || |||||||| ||||| || ||| Sbjct 645 AGCGGCGCTTCGTCTCGCCTCTGCTGAAGCG-GCGCCCGGCGCCGTGGGAGCAGGAACAG 587 Query 136876 AACGAGTCCGCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGG 136935 | | | |||||||| |||||||| |||||| || ||||| || |||||| Sbjct 586 TAGCTGCTCATGTTGCCCTTCCCGCGCACAATGTAGCTGCGCGCGCCCATGGACCCGGGG 527 Query 136936 ATGATCCCGAACTGGTC-CTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCA 136994 | || | ||| || | | | ||| || || ||||||||||| || | | || Sbjct 526 ACGACCGCGAGCTCGCCGCGCCTG-GCGGAGGTGGCGCCCTTGCGAGTGAGCCACACGGC 468 Query 136995 CT-CGTCGAAGTGGAATTC--------CTTCTGGACGTAGTTGTGGTGGCAGTTCACCGC 137045 || | ||| |||| || | || ||||||||||||||||||||||| || Sbjct 467 CTCCCCCGACGTGGCATCCACCACGAATCGCTCCACGTAGTTGTGGTGGCAGTTCACGGC 408 Query 137046 TTCCTTG---TCCGTCTTGA-----ACGGCGGCAGGCCCGACGC-CCGCATGGCCTCCAG 137096 | | | ||| || || |||| | ||| | ||| |||| ||| ||||| Sbjct 407 ATGCGCGCCATCCACCTCGAATGCGACGGACGGGGGCAGGGCGCGGCGCAGGGCGTCCAG 348 Query 137097 GACCCGGACCATCATCATCTCGCGGTTGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGC 137156 || ||||||||| | ||||| | ||| || ||| |||| | || || Sbjct 347 CACAAACGCCATCATCAACCGTCGGTTCCACATCGCATAGGTCTGTGCCCACTCCACCGC 288 Query 137157 TTCCACGTAGTCGTGGAACT--CCGGCTCGCCTTCGCAGAGCCAAGCAAGGTCCTTGTCC 137214 | | ||| || ||| | ||| ||| || ||| | || |||||||||| | Sbjct 287 GGCGATGTACTCCGTGAAGTGGACGG--TGCCCTCTGTGAGGTAGGCGAGGTCCTTGTGC 230 Query 137215 AGCGGCTTGCGCCCGTCA-CGACGCAGCATCATCTCCTTGGCCTTCTCGATGAAGATGCG 137273 || || || || | || || | | ||| || || |||| | ||| || ||| Sbjct 229 GGCAGCGTGTGCAC--CAGCGCCCC--CATGTCCTTCTGGGCCAGAGCAATGTAGGTGCT 174 Query 137274 GCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGACGCGCT---- 137329 ||||||| ||| || | |||||||| |||||||| ||||||||||| ||| ||| Sbjct 173 GCCGATGCGGTTACCAATCCCGCGCGACCCCGAGTGCAGCATCACCCACACGTGCTGCTG 114 Query 137330 -----GGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCCAGGGTGCCCAG 137384 |||| | || ||||| ||||||||||| ||||| || ||| || ||||| || Sbjct 113 AATGGGGTCGTTATCCAGGCACACCTCGATGAAATGGTTCCCAGTGCCGAGCGTGCCGAG 54 Query 137385 TTGG 137388 ||| Sbjct 53 GTGG 50 >seq3961 Length=1262 Score = 188 bits (208), Expect = 1e-42 Identities = 520/784 (66%), Gaps = 41/784 (5%) Strand=Plus/Plus Query 136638 CATGGCCT-AGCCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGT 136696 ||| |||| | |||||||| || || | ||| ||||| ||| | ||||| || | Sbjct 158 CATCGCCTTATCCCTTCACACACAGTATTTGATTGAGCACTGCGACCACCTCCACAAGCT 217 Query 136697 CCTTCTGGGCCTCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATCA 136756 ||| || || | |||||| || ||||||||||||||||| || |||| |||| || Sbjct 218 CCTCTTGTGCATGCATGACGGCATCGATGTCCTTGTAGGCGGCGGGTGTTTCATCGAGCA 277 Query 136757 CGCCAGCGTCCTTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGTGA 136816 |||| |||||||||||||||||||| |||| |||||| | ||||| |||| |||| Sbjct 278 CGCCGGCGTCCTTGCGGCACTCCACTCCCTGAGTGGCCGCCACGTGGTCGGCCAGCGTGA 337 Query 136817 AG-GTCGCCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACGAGCAG 136875 || | ||| | | | | || || | || || || |||||||| ||||| || ||| Sbjct 338 AGCGGCGCTTCGTCTCGCCTCTGCTGAAGCG-GCGCCCGGCGCCGTGGGAGCAGGAACAG 396 Query 136876 AACGAGTCCGCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGG 136935 | | | |||||||| |||||||| |||||| || ||||| || |||||| Sbjct 397 TAGCTGCTCATGTTGCCCTTCCCGCGCACAATGTAGCTGCGCGCGCCCATGGACCCGGGG 456 Query 136936 ATGATCCCGAACTGGTC-CTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCA 136994 | || | ||| || | | | ||| || || ||||||||||| || | | || Sbjct 457 ACGACCGCGAGCTCGCCGCGCCTG-GCGGAGGTGGCGCCCTTGCGAGTGAGCCACACGGC 515 Query 136995 CT-CGTCGAAGTGGAATTC--------CTTCTGGACGTAGTTGTGGTGGCAGTTCACCGC 137045 || | ||| |||| || | || ||||||||||||||||||||||| || Sbjct 516 CTCCCCCGACGTGGCATCCACCACGAATCGCTCCACGTAGTTGTGGTGGCAGTTCACGGC 575 Query 137046 TTCCTTG---TCCGTCTTGA-----ACGGCGGCAGGCCCGACGC-CCGCATGGCCTCCAG 137096 | | | ||| || || |||| | ||| | ||| |||| ||| ||||| Sbjct 576 ATGCGCGCCATCCACCTCGAATGCGACGGACGGGGGCAGGGCGCGGCGCAGGGCGTCCAG 635 Query 137097 GACCCGGACCATCATCATCTCGCGGTTGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGC 137156 || ||||||||| | ||||| | ||| || ||| |||| | || || Sbjct 636 CACAAACGCCATCATCAACCGTCGGTTCCACATCGCATAGGTCTGTGCCCACTCCACCGC 695 Query 137157 TTCCACGTAGTCGTGGAACT--CCGGCTCGCCTTCGCAGAGCCAAGCAAGGTCCTTGTCC 137214 | | ||| || ||| | ||| ||| || ||| | || |||||||||| | Sbjct 696 GGCGATGTACTCCGTGAAGTGGACGG--TGCCCTCTGTGAGGTAGGCGAGGTCCTTGTGC 753 Query 137215 AGCGGCTTGCGCCCGTCA-CGACGCAGCATCATCTCCTTGGCCTTCTCGATGAAGATGCG 137273 || || || || | || || | | ||| || || |||| | ||| || ||| Sbjct 754 GGCAGCGTGTGCAC--CAGCGCCCC--CATGTCCTTCTGGGCCAGAGCAATGTAGGTGCT 809 Query 137274 GCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGACGCGCT---- 137329 ||||||| ||| || | |||||||| |||||||| ||||||||||| ||| ||| Sbjct 810 GCCGATGCGGTTACCAATCCCGCGCGACCCCGAGTGCAGCATCACCCACACGTGCTGCTG 869 Query 137330 -----GGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCCAGGGTGCCCAG 137384 |||| | || ||||| ||||||||||| ||||| || ||| || ||||| || Sbjct 870 AATGGGGTCGTTATCCAGGCACACCTCGATGAAATGGTTCCCAGTGCCGAGCGTGCCGAG 929 Query 137385 TTGG 137388 ||| Sbjct 930 GTGG 933 >seq3719 Length=1599 Score = 183 bits (202), Expect = 4e-41 Identities = 520/785 (66%), Gaps = 43/785 (5%) Strand=Plus/Plus Query 136638 CATGGCCT-AGCCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGT 136696 ||| |||| | |||||||| || || | ||| ||||| ||| | ||||| || | Sbjct 12 CATCGCCTTATCCCTTCACACACAGTATTTGATTGAGCACTGCGACCACCTCCACAAGCT 71 Query 136697 CCTTCTGGGCCTCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATCA 136756 ||| || || | |||||| || ||||||||||||||||| || |||| |||| || Sbjct 72 CCTCTTGTGCATGCATGACGGCATCGATGTCCTTGTAGGCGGCGGGTGTTTCATCGAGCA 131 Query 136757 CGCCAGCGTCCTTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGTGA 136816 |||| |||||||||||||||||||| |||| |||||| | ||||| |||| |||| Sbjct 132 CGCCGGCGTCCTTGCGGCACTCCACTCCCTGAGTGGCCGCCACGTGGTCGGCCAGCGTGA 191 Query 136817 AG-GTCGCCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACGAGCAG 136875 || | ||| | | | | || || | || || || |||||||| ||||| || ||| Sbjct 192 AGCGGCGCTTCGTCTCGCCTCTGCTGAAGCG-GCGCCCGGCGCCGTGGGAGCAGGAACAG 250 Query 136876 AACGAGTCCGCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGG 136935 | | | |||||||| |||||||| |||||| || ||||| || |||||| Sbjct 251 TAGCTGCTCATGTTGCCCTTCCCGCGCACAATGTAGCTGCGCGCGCCCATGGACCCGGGG 310 Query 136936 ATGATCCCGAACTGGTC-CTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCA 136994 | || | ||| || | | | ||| || || ||||||||||| || | | || Sbjct 311 ACGACCGCGAGCTCGCCGCGCCTG-GCGGAGGTGGCGCCCTTGCGAGTGAGCCACACGGC 369 Query 136995 CT-CGTCGAAGTGGAATTC--------CTTCTGGACGTAGTTGTGGTGGCAGTTCACCGC 137045 || | ||| |||| || | || ||||||||||||||||||||||| || Sbjct 370 CTCCCCCGACGTGGCATCCACCACGAATCGCTCCACGTAGTTGTGGTGGCAGTTCACGGC 429 Query 137046 TTCCTTG---TCCGTCTTGA-----ACGGCGGCAGGCCCGACGC-CCGCATGGCCTCCAG 137096 | | | ||| || || |||| | ||| | ||| |||| ||| ||||| Sbjct 430 ATGCGCGCCATCCACCTCGAATGCGACGGACGGGGGCAGGGCGCGGCGCAGGGCGTCCAG 489 Query 137097 GACCCGGACCATCATCATCTCGCGGTTGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGC 137156 || ||||||||| | ||||| | ||| || ||| |||| | || || Sbjct 490 CACAAACGCCATCATCAACCGTCGGTTCCACATCGCATAGGTCTGTGCCCACTCCACCGC 549 Query 137157 TTCCACGTAGTCGTGGAACT--CCGGCTCGCCTTCGCAGAGCCAAGCAAGGTCCTTGTCC 137214 | | ||| || ||| | ||| ||| || ||| | || |||||||||| | Sbjct 550 GGCGATGTACTCCGTGAAGTGGACGG--TGCCCTCTGTGAGGTAGGCGAGGTCCTTGTGC 607 Query 137215 AGCGGCTTGCGCCCGTCA-CGACGCAGCATCATCTCCTTGGCCTTCTCGATGAAGATGCG 137273 || || || || | || || | | ||| || || |||| | ||| || ||| Sbjct 608 GGCAGCGTGTGCAC--CAGCGCCCC--CATGTCCTTCTGGGCCAGAGCAATGTAGGTGCT 663 Query 137274 GCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGACGCGCT---- 137329 ||||||| ||| || | |||||||| |||||||| ||||||||||| ||| ||| Sbjct 664 GCCGATGCGGTTACC-AATCCGCGCGACCCCGAGTGCAGCATCACCCACACGTGCTGCTG 722 Query 137330 ------GGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCCAGGGTGCCCA 137383 |||| | || ||||| ||||||||||| ||||| || ||| || ||||| | Sbjct 723 AATCGGGGTCGTTATCCAGGCACACCTCGATGAAATGGTTCCCAGTGCCGAGCGTGCCGA 782 Query 137384 GTTGG 137388 | ||| Sbjct 783 GGTGG 787 >seq5035 Length=1328 Score = 86.0 bits (94), Expect = 9e-12 Identities = 99/135 (73%), Gaps = 9/135 (7%) Strand=Plus/Minus Query 137263 ATGAAGATGCGGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAG 137322 ||| || ||| ||||||| ||| || | |||||||| |||||||| ||||||||||| Sbjct 1013 ATGTAGGTGCTGCCGATGCGGTTACCAATCCCGCGCGACCCCGAGTGCAGCATCACCCAC 954 Query 137323 ACGCGCT---------GGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCC 137373 ||| ||| |||| | || ||||| ||||||||||| ||||| || ||| Sbjct 953 ACGTGCTGCTGAATGGGGTCGTTATCCAGGCACACCTCGATGAAATGGTTCCCAGTGCCG 894 Query 137374 AGGGTGCCCAGTTGG 137388 || ||||| || ||| Sbjct 893 AGCGTGCCGAGGTGG 879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 690033818510400