Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000442495.1_202013-07-31] 12,772 sequences; 27,283,778 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq4432 104 4e-17 seq3961 104 4e-17 seq3719 104 4e-17 seq8208 87.8 3e-12 seq5763 87.8 3e-12 seq3896 87.8 3e-12 seq123 87.8 3e-12 >seq4432 Length=1001 Score = 104 bits (114), Expect = 4e-17 Identities = 281/420 (67%), Gaps = 29/420 (7%) Strand=Plus/Minus Query 168270 TAACCCTTGACGCACAACACCTGCTTGAGGGTGGCGACGATCTCCACCATTTCTTCCTGG 168329 || ||||| || |||| | || ||||| ||||| | |||||| | || || || Sbjct 817 TATCCCTTCACACACAGTATTTGATTGAGCACTGCGACCACCTCCACAAGCTCCTCTTGT 758 Query 168330 GCCGCCATGACGAGTTCGATCGGCTTGTAAGCCTTCGGCGTCTCGTCGATCACGCCTTCG 168389 || ||||||| ||||| |||||| || || || || |||| |||||| || Sbjct 757 GCATGCATGACGGCATCGATGTCCTTGTAGGCGGCGGGTGTTTCATCGAGCACGCCGGCG 698 Query 168390 TCCTTGCGGCACTCGACGCCCTTCGTGGCTTCGACGTGCTCGTCCAG---GGAGACGAGC 168446 |||||||||||||| || |||| ||||| | ||||| ||| |||| | || | || Sbjct 697 TCCTTGCGGCACTCCACTCCCTGAGTGGCCGCCACGTGGTCGGCCAGCGTGAAGCGGCGC 638 Query 168447 TTC--TTCGCC---GCCGAACGCGACATGACGCGGCCGGCGCCGTGGCTGCACGAGCAGA 168501 ||| ||||| || ||| ||| ||| |||||||||||| ||| || ||| Sbjct 637 TTCGTCTCGCCTCTGCTGAA-GCG-------GCGCCCGGCGCCGTGGGAGCAGGAACAGT 586 Query 168502 AGGCG-TCAGCGTGGCCCTTGCCGCGCACGATGAACGACTTGGCGCCCATCGAACCCGGA 168560 || | ||| || |||||| |||||||| ||| | |||||||| || || || Sbjct 585 AGCTGCTCA-TGTTGCCCTTCCCGCGCACAATGTAGCTGCGCGCGCCCATGGACCCGGGG 527 Query 168561 ATGATGCCGAGTTCGTC-CTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGATGTC 168619 | || |||| ||| | | ||| || || ||||||||||| || | | | | | Sbjct 526 ACGACCGCGAGCTCGCCGCGCCTG-GCGGAGGTGGCGCCCTTGCGAGTGAGCCACACGGC 468 Query 168620 CT-CGCCGAAGTGGCGT--TCCTTG------TTGACGTAGTTGTGGTGACAGTTCACCGC 168670 || | |||| ||||| | || | | |||||||||||||| |||||||| || Sbjct 467 CTCCCCCGACGTGGCATCCACCACGAATCGCTCCACGTAGTTGTGGTGGCAGTTCACGGC 408 >seq3961 Length=1262 Score = 104 bits (114), Expect = 4e-17 Identities = 281/420 (67%), Gaps = 29/420 (7%) Strand=Plus/Plus Query 168270 TAACCCTTGACGCACAACACCTGCTTGAGGGTGGCGACGATCTCCACCATTTCTTCCTGG 168329 || ||||| || |||| | || ||||| ||||| | |||||| | || || || Sbjct 166 TATCCCTTCACACACAGTATTTGATTGAGCACTGCGACCACCTCCACAAGCTCCTCTTGT 225 Query 168330 GCCGCCATGACGAGTTCGATCGGCTTGTAAGCCTTCGGCGTCTCGTCGATCACGCCTTCG 168389 || ||||||| ||||| |||||| || || || || |||| |||||| || Sbjct 226 GCATGCATGACGGCATCGATGTCCTTGTAGGCGGCGGGTGTTTCATCGAGCACGCCGGCG 285 Query 168390 TCCTTGCGGCACTCGACGCCCTTCGTGGCTTCGACGTGCTCGTCCAG---GGAGACGAGC 168446 |||||||||||||| || |||| ||||| | ||||| ||| |||| | || | || Sbjct 286 TCCTTGCGGCACTCCACTCCCTGAGTGGCCGCCACGTGGTCGGCCAGCGTGAAGCGGCGC 345 Query 168447 TTC--TTCGCC---GCCGAACGCGACATGACGCGGCCGGCGCCGTGGCTGCACGAGCAGA 168501 ||| ||||| || ||| ||| ||| |||||||||||| ||| || ||| Sbjct 346 TTCGTCTCGCCTCTGCTGAA-GCG-------GCGCCCGGCGCCGTGGGAGCAGGAACAGT 397 Query 168502 AGGCG-TCAGCGTGGCCCTTGCCGCGCACGATGAACGACTTGGCGCCCATCGAACCCGGA 168560 || | ||| || |||||| |||||||| ||| | |||||||| || || || Sbjct 398 AGCTGCTCA-TGTTGCCCTTCCCGCGCACAATGTAGCTGCGCGCGCCCATGGACCCGGGG 456 Query 168561 ATGATGCCGAGTTCGTC-CTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGATGTC 168619 | || |||| ||| | | ||| || || ||||||||||| || | | | | | Sbjct 457 ACGACCGCGAGCTCGCCGCGCCTG-GCGGAGGTGGCGCCCTTGCGAGTGAGCCACACGGC 515 Query 168620 CT-CGCCGAAGTGGCGT--TCCTTG------TTGACGTAGTTGTGGTGACAGTTCACCGC 168670 || | |||| ||||| | || | | |||||||||||||| |||||||| || Sbjct 516 CTCCCCCGACGTGGCATCCACCACGAATCGCTCCACGTAGTTGTGGTGGCAGTTCACGGC 575 >seq3719 Length=1599 Score = 104 bits (114), Expect = 4e-17 Identities = 281/420 (67%), Gaps = 29/420 (7%) Strand=Plus/Plus Query 168270 TAACCCTTGACGCACAACACCTGCTTGAGGGTGGCGACGATCTCCACCATTTCTTCCTGG 168329 || ||||| || |||| | || ||||| ||||| | |||||| | || || || Sbjct 20 TATCCCTTCACACACAGTATTTGATTGAGCACTGCGACCACCTCCACAAGCTCCTCTTGT 79 Query 168330 GCCGCCATGACGAGTTCGATCGGCTTGTAAGCCTTCGGCGTCTCGTCGATCACGCCTTCG 168389 || ||||||| ||||| |||||| || || || || |||| |||||| || Sbjct 80 GCATGCATGACGGCATCGATGTCCTTGTAGGCGGCGGGTGTTTCATCGAGCACGCCGGCG 139 Query 168390 TCCTTGCGGCACTCGACGCCCTTCGTGGCTTCGACGTGCTCGTCCAG---GGAGACGAGC 168446 |||||||||||||| || |||| ||||| | ||||| ||| |||| | || | || Sbjct 140 TCCTTGCGGCACTCCACTCCCTGAGTGGCCGCCACGTGGTCGGCCAGCGTGAAGCGGCGC 199 Query 168447 TTC--TTCGCC---GCCGAACGCGACATGACGCGGCCGGCGCCGTGGCTGCACGAGCAGA 168501 ||| ||||| || ||| ||| ||| |||||||||||| ||| || ||| Sbjct 200 TTCGTCTCGCCTCTGCTGAA-GCG-------GCGCCCGGCGCCGTGGGAGCAGGAACAGT 251 Query 168502 AGGCG-TCAGCGTGGCCCTTGCCGCGCACGATGAACGACTTGGCGCCCATCGAACCCGGA 168560 || | ||| || |||||| |||||||| ||| | |||||||| || || || Sbjct 252 AGCTGCTCA-TGTTGCCCTTCCCGCGCACAATGTAGCTGCGCGCGCCCATGGACCCGGGG 310 Query 168561 ATGATGCCGAGTTCGTC-CTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGATGTC 168619 | || |||| ||| | | ||| || || ||||||||||| || | | | | | Sbjct 311 ACGACCGCGAGCTCGCCGCGCCTG-GCGGAGGTGGCGCCCTTGCGAGTGAGCCACACGGC 369 Query 168620 CT-CGCCGAAGTGGCGT--TCCTTG------TTGACGTAGTTGTGGTGACAGTTCACCGC 168670 || | |||| ||||| | || | | |||||||||||||| |||||||| || Sbjct 370 CTCCCCCGACGTGGCATCCACCACGAATCGCTCCACGTAGTTGTGGTGGCAGTTCACGGC 429 >seq8208 Length=2373 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 |||||||||||||||| || ||||||| ||||||||||| ||||||| ||||||||| Sbjct 648 GCGGGGTGGAGCAGTCTGGAAGCTCGTCGGGCTCATAACCCGAAGGTCGTAGGTTCAAAT 707 Query 133023 CCCTCCCCCGCATCCA 133038 || |||||||| ||| Sbjct 708 CCTACCCCCGCAACCA 723 >seq5763 Length=4388 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 |||||||||||||||| || ||||||| ||||||||||| ||||||| ||||||||| Sbjct 3140 GCGGGGTGGAGCAGTCTGGAAGCTCGTCGGGCTCATAACCCGAAGGTCGTAGGTTCAAAT 3081 Query 133023 CCCTCCCCCGCATCCA 133038 || |||||||| ||| Sbjct 3080 CCTACCCCCGCAACCA 3065 >seq3896 Length=3565 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 |||||||||||||||| || ||||||| ||||||||||| ||||||| ||||||||| Sbjct 3157 GCGGGGTGGAGCAGTCTGGAAGCTCGTCGGGCTCATAACCCGAAGGTCGTAGGTTCAAAT 3098 Query 133023 CCCTCCCCCGCATCCA 133038 || |||||||| ||| Sbjct 3097 CCTACCCCCGCAACCA 3082 >seq123 Length=5665 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 |||||||||||||||| || ||||||| ||||||||||| ||||||| ||||||||| Sbjct 2870 GCGGGGTGGAGCAGTCTGGAAGCTCGTCGGGCTCATAACCCGAAGGTCGTAGGTTCAAAT 2811 Query 133023 CCCTCCCCCGCATCCA 133038 || |||||||| ||| Sbjct 2810 CCTACCCCCGCAACCA 2795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895623390894240