Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000442495.1_202013-07-31] 12,772 sequences; 27,283,778 total letters Query= NC_019407.1 Length=218929 Score E Sequences producing significant alignments: (Bits) Value seq4432 188 1e-42 seq3961 188 1e-42 seq3719 183 4e-41 seq5035 87.8 3e-12 >seq4432 Length=1001 Score = 188 bits (208), Expect = 1e-42 Identities = 520/784 (66%), Gaps = 41/784 (5%) Strand=Plus/Minus Query 135398 CATGGCCT-AGCCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGT 135456 ||| |||| | |||||||| || || | ||| ||||| ||| | ||||| || | Sbjct 825 CATCGCCTTATCCCTTCACACACAGTATTTGATTGAGCACTGCGACCACCTCCACAAGCT 766 Query 135457 CCTTCTGGGCCTCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATCA 135516 ||| || || | |||||| || ||||||||||||||||| || |||| |||| || Sbjct 765 CCTCTTGTGCATGCATGACGGCATCGATGTCCTTGTAGGCGGCGGGTGTTTCATCGAGCA 706 Query 135517 CGCCAGCGTCCTTACGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGTGA 135576 |||| |||||||| ||||||||||| |||| |||||| | ||||| |||| |||| Sbjct 705 CGCCGGCGTCCTTGCGGCACTCCACTCCCTGAGTGGCCGCCACGTGGTCGGCCAGCGTGA 646 Query 135577 AG-GTCGCCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACGAGCAG 135635 || | ||| | | | | || || | || || || |||||||| ||||| || ||| Sbjct 645 AGCGGCGCTTCGTCTCGCCTCTGCTGAAGCG-GCGCCCGGCGCCGTGGGAGCAGGAACAG 587 Query 135636 AACGAGTCCGCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGG 135695 | | | |||||||| |||||||| |||||| || ||||| || |||||| Sbjct 586 TAGCTGCTCATGTTGCCCTTCCCGCGCACAATGTAGCTGCGCGCGCCCATGGACCCGGGG 527 Query 135696 ATGATCCCGAACTGGTC-CTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCA 135754 | || | ||| || | | | ||| || || ||||||||||| || | | || Sbjct 526 ACGACCGCGAGCTCGCCGCGCCTG-GCGGAGGTGGCGCCCTTGCGAGTGAGCCACACGGC 468 Query 135755 CT-CGTCGAAGTGGAATTC--------CTTCTGGACGTAGTTGTGGTGGCAGTTCACCGC 135805 || | ||| |||| || | || ||||||||||||||||||||||| || Sbjct 467 CTCCCCCGACGTGGCATCCACCACGAATCGCTCCACGTAGTTGTGGTGGCAGTTCACGGC 408 Query 135806 TTCCTTG---TCCGTCTTGA-----ACGGCGGCAGGCCCGACGC-CCGCATGGCCTCCAG 135856 | | | ||| || || |||| | ||| | ||| |||| ||| ||||| Sbjct 407 ATGCGCGCCATCCACCTCGAATGCGACGGACGGGGGCAGGGCGCGGCGCAGGGCGTCCAG 348 Query 135857 GACCCGGACCATCATCATCTCGCGGTTGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGC 135916 || ||||||||| | ||||| | ||| || ||| |||| | || || Sbjct 347 CACAAACGCCATCATCAACCGTCGGTTCCACATCGCATAGGTCTGTGCCCACTCCACCGC 288 Query 135917 TTCCACGTAGTCGTGGAACT--CCGGTTCGCCTTCGCAGAGCCAAGCAAGGTCCTTGTCC 135974 | | ||| || ||| | |||| ||| || ||| | || |||||||||| | Sbjct 287 GGCGATGTACTCCGTGAAGTGGACGGT--GCCCTCTGTGAGGTAGGCGAGGTCCTTGTGC 230 Query 135975 AGCGGCTTGCGCCCGTCA-CGCCGCAGCATCATCTCCTTGGCCTTCTCGATGAAGATACG 136033 || || || || | || |||| | ||| || || |||| | ||| || | | Sbjct 229 GGCAGCGTGTGCAC--CAGCGCCCC--CATGTCCTTCTGGGCCAGAGCAATGTAGGTGCT 174 Query 136034 GCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGACGCGCT---- 136089 ||||||| ||| || | |||||||| |||||||| ||||||||||| ||| ||| Sbjct 173 GCCGATGCGGTTACCAATCCCGCGCGACCCCGAGTGCAGCATCACCCACACGTGCTGCTG 114 Query 136090 -----GGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCCAGGGTGCCCAG 136144 |||| | || ||||| ||||||||||| ||||| || ||| || ||||| || Sbjct 113 AATGGGGTCGTTATCCAGGCACACCTCGATGAAATGGTTCCCAGTGCCGAGCGTGCCGAG 54 Query 136145 TTGG 136148 ||| Sbjct 53 GTGG 50 >seq3961 Length=1262 Score = 188 bits (208), Expect = 1e-42 Identities = 520/784 (66%), Gaps = 41/784 (5%) Strand=Plus/Plus Query 135398 CATGGCCT-AGCCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGT 135456 ||| |||| | |||||||| || || | ||| ||||| ||| | ||||| || | Sbjct 158 CATCGCCTTATCCCTTCACACACAGTATTTGATTGAGCACTGCGACCACCTCCACAAGCT 217 Query 135457 CCTTCTGGGCCTCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATCA 135516 ||| || || | |||||| || ||||||||||||||||| || |||| |||| || Sbjct 218 CCTCTTGTGCATGCATGACGGCATCGATGTCCTTGTAGGCGGCGGGTGTTTCATCGAGCA 277 Query 135517 CGCCAGCGTCCTTACGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGTGA 135576 |||| |||||||| ||||||||||| |||| |||||| | ||||| |||| |||| Sbjct 278 CGCCGGCGTCCTTGCGGCACTCCACTCCCTGAGTGGCCGCCACGTGGTCGGCCAGCGTGA 337 Query 135577 AG-GTCGCCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACGAGCAG 135635 || | ||| | | | | || || | || || || |||||||| ||||| || ||| Sbjct 338 AGCGGCGCTTCGTCTCGCCTCTGCTGAAGCG-GCGCCCGGCGCCGTGGGAGCAGGAACAG 396 Query 135636 AACGAGTCCGCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGG 135695 | | | |||||||| |||||||| |||||| || ||||| || |||||| Sbjct 397 TAGCTGCTCATGTTGCCCTTCCCGCGCACAATGTAGCTGCGCGCGCCCATGGACCCGGGG 456 Query 135696 ATGATCCCGAACTGGTC-CTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCA 135754 | || | ||| || | | | ||| || || ||||||||||| || | | || Sbjct 457 ACGACCGCGAGCTCGCCGCGCCTG-GCGGAGGTGGCGCCCTTGCGAGTGAGCCACACGGC 515 Query 135755 CT-CGTCGAAGTGGAATTC--------CTTCTGGACGTAGTTGTGGTGGCAGTTCACCGC 135805 || | ||| |||| || | || ||||||||||||||||||||||| || Sbjct 516 CTCCCCCGACGTGGCATCCACCACGAATCGCTCCACGTAGTTGTGGTGGCAGTTCACGGC 575 Query 135806 TTCCTTG---TCCGTCTTGA-----ACGGCGGCAGGCCCGACGC-CCGCATGGCCTCCAG 135856 | | | ||| || || |||| | ||| | ||| |||| ||| ||||| Sbjct 576 ATGCGCGCCATCCACCTCGAATGCGACGGACGGGGGCAGGGCGCGGCGCAGGGCGTCCAG 635 Query 135857 GACCCGGACCATCATCATCTCGCGGTTGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGC 135916 || ||||||||| | ||||| | ||| || ||| |||| | || || Sbjct 636 CACAAACGCCATCATCAACCGTCGGTTCCACATCGCATAGGTCTGTGCCCACTCCACCGC 695 Query 135917 TTCCACGTAGTCGTGGAACT--CCGGTTCGCCTTCGCAGAGCCAAGCAAGGTCCTTGTCC 135974 | | ||| || ||| | |||| ||| || ||| | || |||||||||| | Sbjct 696 GGCGATGTACTCCGTGAAGTGGACGGT--GCCCTCTGTGAGGTAGGCGAGGTCCTTGTGC 753 Query 135975 AGCGGCTTGCGCCCGTCA-CGCCGCAGCATCATCTCCTTGGCCTTCTCGATGAAGATACG 136033 || || || || | || |||| | ||| || || |||| | ||| || | | Sbjct 754 GGCAGCGTGTGCAC--CAGCGCCCC--CATGTCCTTCTGGGCCAGAGCAATGTAGGTGCT 809 Query 136034 GCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGACGCGCT---- 136089 ||||||| ||| || | |||||||| |||||||| ||||||||||| ||| ||| Sbjct 810 GCCGATGCGGTTACCAATCCCGCGCGACCCCGAGTGCAGCATCACCCACACGTGCTGCTG 869 Query 136090 -----GGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCCAGGGTGCCCAG 136144 |||| | || ||||| ||||||||||| ||||| || ||| || ||||| || Sbjct 870 AATGGGGTCGTTATCCAGGCACACCTCGATGAAATGGTTCCCAGTGCCGAGCGTGCCGAG 929 Query 136145 TTGG 136148 ||| Sbjct 930 GTGG 933 >seq3719 Length=1599 Score = 183 bits (202), Expect = 4e-41 Identities = 520/785 (66%), Gaps = 43/785 (5%) Strand=Plus/Plus Query 135398 CATGGCCT-AGCCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGT 135456 ||| |||| | |||||||| || || | ||| ||||| ||| | ||||| || | Sbjct 12 CATCGCCTTATCCCTTCACACACAGTATTTGATTGAGCACTGCGACCACCTCCACAAGCT 71 Query 135457 CCTTCTGGGCCTCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATCA 135516 ||| || || | |||||| || ||||||||||||||||| || |||| |||| || Sbjct 72 CCTCTTGTGCATGCATGACGGCATCGATGTCCTTGTAGGCGGCGGGTGTTTCATCGAGCA 131 Query 135517 CGCCAGCGTCCTTACGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGTGA 135576 |||| |||||||| ||||||||||| |||| |||||| | ||||| |||| |||| Sbjct 132 CGCCGGCGTCCTTGCGGCACTCCACTCCCTGAGTGGCCGCCACGTGGTCGGCCAGCGTGA 191 Query 135577 AG-GTCGCCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACGAGCAG 135635 || | ||| | | | | || || | || || || |||||||| ||||| || ||| Sbjct 192 AGCGGCGCTTCGTCTCGCCTCTGCTGAAGCG-GCGCCCGGCGCCGTGGGAGCAGGAACAG 250 Query 135636 AACGAGTCCGCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGG 135695 | | | |||||||| |||||||| |||||| || ||||| || |||||| Sbjct 251 TAGCTGCTCATGTTGCCCTTCCCGCGCACAATGTAGCTGCGCGCGCCCATGGACCCGGGG 310 Query 135696 ATGATCCCGAACTGGTC-CTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCA 135754 | || | ||| || | | | ||| || || ||||||||||| || | | || Sbjct 311 ACGACCGCGAGCTCGCCGCGCCTG-GCGGAGGTGGCGCCCTTGCGAGTGAGCCACACGGC 369 Query 135755 CT-CGTCGAAGTGGAATTC--------CTTCTGGACGTAGTTGTGGTGGCAGTTCACCGC 135805 || | ||| |||| || | || ||||||||||||||||||||||| || Sbjct 370 CTCCCCCGACGTGGCATCCACCACGAATCGCTCCACGTAGTTGTGGTGGCAGTTCACGGC 429 Query 135806 TTCCTTG---TCCGTCTTGA-----ACGGCGGCAGGCCCGACGC-CCGCATGGCCTCCAG 135856 | | | ||| || || |||| | ||| | ||| |||| ||| ||||| Sbjct 430 ATGCGCGCCATCCACCTCGAATGCGACGGACGGGGGCAGGGCGCGGCGCAGGGCGTCCAG 489 Query 135857 GACCCGGACCATCATCATCTCGCGGTTGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGC 135916 || ||||||||| | ||||| | ||| || ||| |||| | || || Sbjct 490 CACAAACGCCATCATCAACCGTCGGTTCCACATCGCATAGGTCTGTGCCCACTCCACCGC 549 Query 135917 TTCCACGTAGTCGTGGAACT--CCGGTTCGCCTTCGCAGAGCCAAGCAAGGTCCTTGTCC 135974 | | ||| || ||| | |||| ||| || ||| | || |||||||||| | Sbjct 550 GGCGATGTACTCCGTGAAGTGGACGGT--GCCCTCTGTGAGGTAGGCGAGGTCCTTGTGC 607 Query 135975 AGCGGCTTGCGCCCGTCA-CGCCGCAGCATCATCTCCTTGGCCTTCTCGATGAAGATACG 136033 || || || || | || |||| | ||| || || |||| | ||| || | | Sbjct 608 GGCAGCGTGTGCAC--CAGCGCCCC--CATGTCCTTCTGGGCCAGAGCAATGTAGGTGCT 663 Query 136034 GCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGACGCGCT---- 136089 ||||||| ||| || | |||||||| |||||||| ||||||||||| ||| ||| Sbjct 664 GCCGATGCGGTTACC-AATCCGCGCGACCCCGAGTGCAGCATCACCCACACGTGCTGCTG 722 Query 136090 ------GGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCCAGGGTGCCCA 136143 |||| | || ||||| ||||||||||| ||||| || ||| || ||||| | Sbjct 723 AATCGGGGTCGTTATCCAGGCACACCTCGATGAAATGGTTCCCAGTGCCGAGCGTGCCGA 782 Query 136144 GTTGG 136148 | ||| Sbjct 783 GGTGG 787 >seq5035 Length=1328 Score = 87.8 bits (96), Expect = 3e-12 Identities = 257/390 (66%), Gaps = 27/390 (7%) Strand=Plus/Minus Query 135780 ACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTG---TCCGTCTTGAA-----CGGCGGCA 135831 ||||||||||||||||||||||| || | | | ||| || ||| ||| | Sbjct 1262 ACGTAGTTGTGGTGGCAGTTCACGGCATGCGCGCCATCCACCTCGAATGCGACGGACGGG 1203 Query 135832 GGCCCGACGCC-CGCATGGCCTCCAGGACCCGGACCATCATCATCTCGCGGTTGATCCGC 135890 ||| | ||| |||| ||| ||||| || ||||||||| | ||||| | | Sbjct 1202 GGCAGGGCGCGGCGCAGGGCGTCCAGCACAAACGCCATCATCAACCGTCGGTTCCACATC 1143 Query 135891 GCGAAGTCCTGGCCCCAGGCGACGGCTTCCACGTAGTCGTGGAACTC--CGGTTCGCCTT 135948 || || ||| |||| | || || | | ||| || ||| | |||| ||| | Sbjct 1142 GCATAGGTCTGTGCCCACTCCACCGCGGCGATGTACTCCGTGAAGTGGACGGT--GCCCT 1085 Query 135949 CGCAGAGCCAAGCAAGGTCCTTGTCCAGCGGCTTGCGCCCGTCA-CGCCGCAGCATCATC 136007 | ||| | || |||||||||| | || || || || | || |||| | ||| | Sbjct 1084 CTGTGAGGTAGGCGAGGTCCTTGTGCGGCAGCGTGTGCAC--CAGCGCCCC--CATGTCC 1029 Query 136008 TCCTTGGCCTTCTCGATGAAGATACGGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAG 136067 | || |||| | ||| || | | ||||||| ||| || | |||||||| |||||| Sbjct 1028 TTCTGGGCCAGAGCAATGTAGGTGCTGCCGATGCGGTTACCAATCCCGCGCGACCCCGAG 969 Query 136068 TGGAGCATCACCCAGACGCGCT---------GGTCCTCGTCGAGGCAGACCTCGATGAAG 136118 || ||||||||||| ||| ||| |||| | || ||||| ||||||||||| Sbjct 968 TGCAGCATCACCCACACGTGCTGCTGAATGGGGTCGTTATCCAGGCACACCTCGATGAAA 909 Query 136119 TGGTTGCCGCCGCCCAGGGTGCCCAGTTGG 136148 ||||| || ||| || ||||| || ||| Sbjct 908 TGGTTCCCAGTGCCGAGCGTGCCGAGGTGG 879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 700332973987680