Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000442495.1_202013-07-31] 12,772 sequences; 27,283,778 total letters Query= NC_019408.1 Length=223720 Score E Sequences producing significant alignments: (Bits) Value seq4432 95.1 2e-14 seq3961 95.1 2e-14 seq5035 86.0 9e-12 seq3719 86.0 9e-12 >seq4432 Length=1001 Score = 95.1 bits (104), Expect = 2e-14 Identities = 431/667 (65%), Gaps = 46/667 (7%) Strand=Plus/Minus Query 139505 GCGGCACTCGACGCCTTCGGTCGCCTTGATCTGGTCTTCCAGCGTGAAGGCGGC-CTTGG 139563 ||||||||| || || | || ||| | ||||| ||||||||||| |||| ||| | Sbjct 692 GCGGCACTCCACTCCCTGAGTGGCCGCCACGTGGTCGGCCAGCGTGAAG-CGGCGCTTCG 634 Query 139564 ---CGGCGGTGCGCGACATGGTCCGCCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCGG 139620 || | ||| || || ||||| |||||||| ||||| || ||| | | Sbjct 633 TCTCGCCTCTGCT-GAAGCGG--CGCCCGGCGCCGTGGGAGCAGGAACAGTAGCTGCTCA 577 Query 139621 CGTTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATGCCGA 139680 ||||||||| |||||||| |||||| || ||||| || ||||||| || ||| Sbjct 576 TGTTGCCCTTCCCGCGCACAATGTAGCTGCGCGCGCCCATGGACCCGGGGACGACCGCGA 517 Query 139681 ACTGGTC-CTTCTGAGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTC-GAA 139738 || | | | ||| || || ||||||||||| || | | || ||| | || Sbjct 516 GCTCGCCGCGCCTG-GCGGAGGTGGCGCCCTTGCGAGTGAGCCACACGGCCTCCCCCGAC 458 Query 139739 GTGGAA--CTCCTT------CTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTG--- 139787 |||| | | || || ||||||||||||||||||||||| || | | | Sbjct 457 GTGGCATCCACCACGAATCGCTCCACGTAGTTGTGGTGGCAGTTCACGGCATGCGCGCCA 398 Query 139788 TCCGTCTTGAAGGG--CGG-CAGGCCCGAGGCGCG---CATGGCGTCCAGGACCCGGATC 139841 ||| || ||| | ||| | || | |||||| || ||||||||| || | Sbjct 397 TCCACCTCGAATGCGACGGACGGGGGCAGGGCGCGGCGCAGGGCGTCCAGCACAAACGCC 338 Query 139842 ATCATCATCTCGCGGTTGATCCGCGCGAAGTCCTGACCCCAGGCGACGGCTTCCACGTAG 139901 ||||||| | ||||| | ||| || ||| |||| | || || | | ||| Sbjct 337 ATCATCAACCGTCGGTTCCACATCGCATAGGTCTGTGCCCACTCCACCGCGGCGATGTAC 278 Query 139902 TCGTAGAATTC--CGGCTCGCCTTCCGACAGCCACGCGAGGTCCTTGTCGAGCGGCTTCT 139959 || ||| | ||| ||| || | || | ||||||||||||| || || | | Sbjct 277 TCCGTGAAGTGGACGGT--GCCCTCTGTGAGGTAGGCGAGGTCCTTGTGCGGCAGCGTGT 220 Query 139960 G-ACCGTCCCGACGCAGCATCATCTCCTTGGCCTTCTCGATGAAGATACGGCCGATGGTG 140018 | ||| | | | ||| || || |||| | ||| || | | ||||||| | Sbjct 219 GCACCAGCGCCCC----CATGTCCTTCTGGGCCAGAGCAATGTAGGTGCTGCCGATGCGG 164 Query 140019 TTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGACGCGCT---------GGTCC 140069 || || | |||||||| |||||||| ||||||||||| ||| ||| |||| Sbjct 163 TTACCAATCCCGCGCGACCCCGAGTGCAGCATCACCCACACGTGCTGCTGAATGGGGTCG 104 Query 140070 TCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCCAGCGTGCCCAGTTGGACGACG 140129 | || ||||| ||||||||||| ||||| || ||| |||||||| || ||| || | Sbjct 103 TTATCCAGGCACACCTCGATGAAATGGTTCCCAGTGCCGAGCGTGCCGAGGTGGTTGATG 44 Query 140130 CTGTTGG 140136 ||||| Sbjct 43 TGGTTGG 37 >seq3961 Length=1262 Score = 95.1 bits (104), Expect = 2e-14 Identities = 431/667 (65%), Gaps = 46/667 (7%) Strand=Plus/Plus Query 139505 GCGGCACTCGACGCCTTCGGTCGCCTTGATCTGGTCTTCCAGCGTGAAGGCGGC-CTTGG 139563 ||||||||| || || | || ||| | ||||| ||||||||||| |||| ||| | Sbjct 291 GCGGCACTCCACTCCCTGAGTGGCCGCCACGTGGTCGGCCAGCGTGAAG-CGGCGCTTCG 349 Query 139564 ---CGGCGGTGCGCGACATGGTCCGCCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCGG 139620 || | ||| || || ||||| |||||||| ||||| || ||| | | Sbjct 350 TCTCGCCTCTGCT-GAAGCGG--CGCCCGGCGCCGTGGGAGCAGGAACAGTAGCTGCTCA 406 Query 139621 CGTTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATGCCGA 139680 ||||||||| |||||||| |||||| || ||||| || ||||||| || ||| Sbjct 407 TGTTGCCCTTCCCGCGCACAATGTAGCTGCGCGCGCCCATGGACCCGGGGACGACCGCGA 466 Query 139681 ACTGGTC-CTTCTGAGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTC-GAA 139738 || | | | ||| || || ||||||||||| || | | || ||| | || Sbjct 467 GCTCGCCGCGCCTG-GCGGAGGTGGCGCCCTTGCGAGTGAGCCACACGGCCTCCCCCGAC 525 Query 139739 GTGGAA--CTCCTT------CTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTG--- 139787 |||| | | || || ||||||||||||||||||||||| || | | | Sbjct 526 GTGGCATCCACCACGAATCGCTCCACGTAGTTGTGGTGGCAGTTCACGGCATGCGCGCCA 585 Query 139788 TCCGTCTTGAAGGG--CGG-CAGGCCCGAGGCGCG---CATGGCGTCCAGGACCCGGATC 139841 ||| || ||| | ||| | || | |||||| || ||||||||| || | Sbjct 586 TCCACCTCGAATGCGACGGACGGGGGCAGGGCGCGGCGCAGGGCGTCCAGCACAAACGCC 645 Query 139842 ATCATCATCTCGCGGTTGATCCGCGCGAAGTCCTGACCCCAGGCGACGGCTTCCACGTAG 139901 ||||||| | ||||| | ||| || ||| |||| | || || | | ||| Sbjct 646 ATCATCAACCGTCGGTTCCACATCGCATAGGTCTGTGCCCACTCCACCGCGGCGATGTAC 705 Query 139902 TCGTAGAATTC--CGGCTCGCCTTCCGACAGCCACGCGAGGTCCTTGTCGAGCGGCTTCT 139959 || ||| | ||| ||| || | || | ||||||||||||| || || | | Sbjct 706 TCCGTGAAGTGGACGGT--GCCCTCTGTGAGGTAGGCGAGGTCCTTGTGCGGCAGCGTGT 763 Query 139960 G-ACCGTCCCGACGCAGCATCATCTCCTTGGCCTTCTCGATGAAGATACGGCCGATGGTG 140018 | ||| | | | ||| || || |||| | ||| || | | ||||||| | Sbjct 764 GCACCAGCGCCCC----CATGTCCTTCTGGGCCAGAGCAATGTAGGTGCTGCCGATGCGG 819 Query 140019 TTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGACGCGCT---------GGTCC 140069 || || | |||||||| |||||||| ||||||||||| ||| ||| |||| Sbjct 820 TTACCAATCCCGCGCGACCCCGAGTGCAGCATCACCCACACGTGCTGCTGAATGGGGTCG 879 Query 140070 TCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCCAGCGTGCCCAGTTGGACGACG 140129 | || ||||| ||||||||||| ||||| || ||| |||||||| || ||| || | Sbjct 880 TTATCCAGGCACACCTCGATGAAATGGTTCCCAGTGCCGAGCGTGCCGAGGTGGTTGATG 939 Query 140130 CTGTTGG 140136 ||||| Sbjct 940 TGGTTGG 946 >seq5035 Length=1328 Score = 86.0 bits (94), Expect = 9e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 140349 ACGGCCATCATGCCGCAGCCGATGTCCACGCCCACGGCCGCCGGGATGATGGCGCCCTTG 140408 || |||| ||||||||| || ||||||||||| ||| || ||||| | ||||| | Sbjct 644 ACAGCCACCATGCCGCACCCAATGTCCACGCCGACGCTGGCGGGGATCAGCGCGCCGCTC 585 Query 140409 GTCGGGATCACCGAGCCCACGGTCGAGCCGATGCCCATGTGGACGTCCGGCATCAGGGCC 140468 ||||||||||||| || || || | |||||||| |||||| || ||||| | ||| Sbjct 584 GTCGGGATCACCGTCCCGACCGTGCACCCGATGCCGCCGTGGACATCTGGCATGATGGCG 525 Query 140469 AC 140470 || Sbjct 524 AC 523 Score = 86.0 bits (94), Expect = 9e-12 Identities = 107/148 (72%), Gaps = 9/148 (6%) Strand=Plus/Minus Query 139998 ATGAAGATACGGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAG 140057 ||| || | | ||||||| ||| || | |||||||| |||||||| ||||||||||| Sbjct 1013 ATGTAGGTGCTGCCGATGCGGTTACCAATCCCGCGCGACCCCGAGTGCAGCATCACCCAC 954 Query 140058 ACGCGCT---------GGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCC 140108 ||| ||| |||| | || ||||| ||||||||||| ||||| || ||| Sbjct 953 ACGTGCTGCTGAATGGGGTCGTTATCCAGGCACACCTCGATGAAATGGTTCCCAGTGCCG 894 Query 140109 AGCGTGCCCAGTTGGACGACGCTGTTGG 140136 |||||||| || ||| || | ||||| Sbjct 893 AGCGTGCCGAGGTGGTTGATGTGGTTGG 866 >seq3719 Length=1599 Score = 86.0 bits (94), Expect = 9e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 140349 ACGGCCATCATGCCGCAGCCGATGTCCACGCCCACGGCCGCCGGGATGATGGCGCCCTTG 140408 || |||| ||||||||| || ||||||||||| ||| || ||||| | ||||| | Sbjct 1022 ACAGCCACCATGCCGCACCCAATGTCCACGCCGACGCTGGCGGGGATCAGCGCGCCGCTC 1081 Query 140409 GTCGGGATCACCGAGCCCACGGTCGAGCCGATGCCCATGTGGACGTCCGGCATCAGGGCC 140468 ||||||||||||| || || || | |||||||| |||||| || ||||| | ||| Sbjct 1082 GTCGGGATCACCGTCCCGACCGTGCACCCGATGCCGCCGTGGACATCTGGCATGATGGCG 1141 Query 140469 AC 140470 || Sbjct 1142 AC 1143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715661726361600