Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000442495.1_202013-07-31] 12,772 sequences; 27,283,778 total letters Query= NC_019410.1 Length=221828 Score E Sequences producing significant alignments: (Bits) Value seq4432 145 1e-29 seq3961 145 1e-29 seq3719 143 4e-29 >seq4432 Length=1001 Score = 145 bits (160), Expect = 1e-29 Identities = 445/678 (66%), Gaps = 44/678 (6%) Strand=Plus/Minus Query 137304 TTTCGTCGATCACGCCGGCGTCCTTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGT 137363 |||| |||| ||||||||||||||||||||||||||| |||| |||||| | |||| Sbjct 717 TTTCATCGAGCACGCCGGCGTCCTTGCGGCACTCCACTCCCTGAGTGGCCGCCACGTGGT 658 Query 137364 CCTCCAGAGTGAAG-GTCGCCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGC 137422 | |||| |||||| | ||| | | | | || || | || || || |||||||| Sbjct 657 CGGCCAGCGTGAAGCGGCGCTTCGTCTCGCCTCTGCTGAAGCG-GCGCCCGGCGCCGTGG 599 Query 137423 GAGCACGAGCAGAACGAGTCCGCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCC 137482 ||||| || ||| | | | |||||||| |||||||| |||||| || ||| Sbjct 598 GAGCAGGAACAGTAGCTGCTCATGTTGCCCTTCCCGCGCACAATGTAGCTGCGCGCGCCC 539 Query 137483 ATCGAGCCGGGGATGATCCCGAACTGGTC-CTTCTGCGCCGACACCGCGCCCTTGCGGGT 137541 || || ||||||| || | ||| || | | | ||| || || ||||||||||| || Sbjct 538 ATGGACCCGGGGACGACCGCGAGCTCGCCGCGCCTG-GCGGAGGTGGCGCCCTTGCGAGT 480 Query 137542 CACGAAGACCCACT-CGTCGAAGTGGAATTC--------CTTCTGGACGTAGTTGTGGTG 137592 | | || || | ||| |||| || | || |||||||||||||| Sbjct 479 GAGCCACACGGCCTCCCCCGACGTGGCATCCACCACGAATCGCTCCACGTAGTTGTGGTG 420 Query 137593 GCAGTTCACCGCTTCCTTG---TCCGTCTTGA-----ACGGCGGCAGGCCCGACGC-CCG 137643 ||||||||| || | | | ||| || || |||| | ||| | ||| || Sbjct 419 GCAGTTCACGGCATGCGCGCCATCCACCTCGAATGCGACGGACGGGGGCAGGGCGCGGCG 360 Query 137644 CATGGCCTCCAGGACCCGGACCATCATCATCTCGCGGTTGATCCGCGCGAAGTCCTGGCC 137703 || ||| ||||| || ||||||||| | ||||| | ||| || ||| | Sbjct 359 CAGGGCGTCCAGCACAAACGCCATCATCAACCGTCGGTTCCACATCGCATAGGTCTGTGC 300 Query 137704 CCAGGCGACGGCTTCCACGTAGTCGTGGAACT--CCGGCTCGCCTTCGCAGAGCCAAGCA 137761 ||| | || || | | ||| || ||| | ||| ||| || ||| | || Sbjct 299 CCACTCCACCGCGGCGATGTACTCCGTGAAGTGGACGG--TGCCCTCTGTGAGGTAGGCG 242 Query 137762 AGGTCCTTGTCCAGCGGCTTGCGCCCGTCACGGCGCAGCATCATCTCCTT---GGCCTTC 137818 |||||||||| | || || || || | | |||| | ||| ||||| |||| Sbjct 241 AGGTCCTTGTGCGGCAGCGTGTGCAC----CAGCGC--CCCCATGTCCTTCTGGGCCAGA 188 Query 137819 TCGATGAAGATGCGGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACC 137878 | ||| || ||| ||||||| ||| || | |||||||| |||||||| ||||||||| Sbjct 187 GCAATGTAGGTGCTGCCGATGCGGTTACCAATCCCGCGCGACCCCGAGTGCAGCATCACC 128 Query 137879 CAGACGCGCT---------GATCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCG 137929 || ||| ||| | || | || ||||| ||||||||||| ||||| || | Sbjct 127 CACACGTGCTGCTGAATGGGGTCGTTATCCAGGCACACCTCGATGAAATGGTTCCCAGTG 68 Query 137930 CCCAGGGTGCCCAGTTGG 137947 || || ||||| || ||| Sbjct 67 CCGAGCGTGCCGAGGTGG 50 >seq3961 Length=1262 Score = 145 bits (160), Expect = 1e-29 Identities = 445/678 (66%), Gaps = 44/678 (6%) Strand=Plus/Plus Query 137304 TTTCGTCGATCACGCCGGCGTCCTTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGT 137363 |||| |||| ||||||||||||||||||||||||||| |||| |||||| | |||| Sbjct 266 TTTCATCGAGCACGCCGGCGTCCTTGCGGCACTCCACTCCCTGAGTGGCCGCCACGTGGT 325 Query 137364 CCTCCAGAGTGAAG-GTCGCCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGC 137422 | |||| |||||| | ||| | | | | || || | || || || |||||||| Sbjct 326 CGGCCAGCGTGAAGCGGCGCTTCGTCTCGCCTCTGCTGAAGCG-GCGCCCGGCGCCGTGG 384 Query 137423 GAGCACGAGCAGAACGAGTCCGCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCC 137482 ||||| || ||| | | | |||||||| |||||||| |||||| || ||| Sbjct 385 GAGCAGGAACAGTAGCTGCTCATGTTGCCCTTCCCGCGCACAATGTAGCTGCGCGCGCCC 444 Query 137483 ATCGAGCCGGGGATGATCCCGAACTGGTC-CTTCTGCGCCGACACCGCGCCCTTGCGGGT 137541 || || ||||||| || | ||| || | | | ||| || || ||||||||||| || Sbjct 445 ATGGACCCGGGGACGACCGCGAGCTCGCCGCGCCTG-GCGGAGGTGGCGCCCTTGCGAGT 503 Query 137542 CACGAAGACCCACT-CGTCGAAGTGGAATTC--------CTTCTGGACGTAGTTGTGGTG 137592 | | || || | ||| |||| || | || |||||||||||||| Sbjct 504 GAGCCACACGGCCTCCCCCGACGTGGCATCCACCACGAATCGCTCCACGTAGTTGTGGTG 563 Query 137593 GCAGTTCACCGCTTCCTTG---TCCGTCTTGA-----ACGGCGGCAGGCCCGACGC-CCG 137643 ||||||||| || | | | ||| || || |||| | ||| | ||| || Sbjct 564 GCAGTTCACGGCATGCGCGCCATCCACCTCGAATGCGACGGACGGGGGCAGGGCGCGGCG 623 Query 137644 CATGGCCTCCAGGACCCGGACCATCATCATCTCGCGGTTGATCCGCGCGAAGTCCTGGCC 137703 || ||| ||||| || ||||||||| | ||||| | ||| || ||| | Sbjct 624 CAGGGCGTCCAGCACAAACGCCATCATCAACCGTCGGTTCCACATCGCATAGGTCTGTGC 683 Query 137704 CCAGGCGACGGCTTCCACGTAGTCGTGGAACT--CCGGCTCGCCTTCGCAGAGCCAAGCA 137761 ||| | || || | | ||| || ||| | ||| ||| || ||| | || Sbjct 684 CCACTCCACCGCGGCGATGTACTCCGTGAAGTGGACGG--TGCCCTCTGTGAGGTAGGCG 741 Query 137762 AGGTCCTTGTCCAGCGGCTTGCGCCCGTCACGGCGCAGCATCATCTCCTT---GGCCTTC 137818 |||||||||| | || || || || | | |||| | ||| ||||| |||| Sbjct 742 AGGTCCTTGTGCGGCAGCGTGTGCAC----CAGCGC--CCCCATGTCCTTCTGGGCCAGA 795 Query 137819 TCGATGAAGATGCGGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACC 137878 | ||| || ||| ||||||| ||| || | |||||||| |||||||| ||||||||| Sbjct 796 GCAATGTAGGTGCTGCCGATGCGGTTACCAATCCCGCGCGACCCCGAGTGCAGCATCACC 855 Query 137879 CAGACGCGCT---------GATCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCG 137929 || ||| ||| | || | || ||||| ||||||||||| ||||| || | Sbjct 856 CACACGTGCTGCTGAATGGGGTCGTTATCCAGGCACACCTCGATGAAATGGTTCCCAGTG 915 Query 137930 CCCAGGGTGCCCAGTTGG 137947 || || ||||| || ||| Sbjct 916 CCGAGCGTGCCGAGGTGG 933 >seq3719 Length=1599 Score = 143 bits (158), Expect = 4e-29 Identities = 448/679 (66%), Gaps = 46/679 (7%) Strand=Plus/Plus Query 137304 TTTCGTCGATCACGCCGGCGTCCTTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGT 137363 |||| |||| ||||||||||||||||||||||||||| |||| |||||| | |||| Sbjct 120 TTTCATCGAGCACGCCGGCGTCCTTGCGGCACTCCACTCCCTGAGTGGCCGCCACGTGGT 179 Query 137364 CCTCCAGAGTGAAG-GTCGCCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGC 137422 | |||| |||||| | ||| | | | | || || | || || || |||||||| Sbjct 180 CGGCCAGCGTGAAGCGGCGCTTCGTCTCGCCTCTGCTGAAGCG-GCGCCCGGCGCCGTGG 238 Query 137423 GAGCACGAGCAGAACGAGTCCGCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCC 137482 ||||| || ||| | | | |||||||| |||||||| |||||| || ||| Sbjct 239 GAGCAGGAACAGTAGCTGCTCATGTTGCCCTTCCCGCGCACAATGTAGCTGCGCGCGCCC 298 Query 137483 ATCGAGCCGGGGATGATCCCGAACTGGTC-CTTCTGCGCCGACACCGCGCCCTTGCGGGT 137541 || || ||||||| || | ||| || | | | ||| || || ||||||||||| || Sbjct 299 ATGGACCCGGGGACGACCGCGAGCTCGCCGCGCCTG-GCGGAGGTGGCGCCCTTGCGAGT 357 Query 137542 CACGAAGACCCACT-CGTCGAAGTGGAATTC--------CTTCTGGACGTAGTTGTGGTG 137592 | | || || | ||| |||| || | || |||||||||||||| Sbjct 358 GAGCCACACGGCCTCCCCCGACGTGGCATCCACCACGAATCGCTCCACGTAGTTGTGGTG 417 Query 137593 GCAGTTCACCGCTTCCTTG---TCCGTCTTGA-----ACGGCGGCAGGCCCGACGC-CCG 137643 ||||||||| || | | | ||| || || |||| | ||| | ||| || Sbjct 418 GCAGTTCACGGCATGCGCGCCATCCACCTCGAATGCGACGGACGGGGGCAGGGCGCGGCG 477 Query 137644 CATGGCCTCCAGGACCCGGACCATCATCATCTCGCGGTTGATCCGCGCGAAGTCCTGGCC 137703 || ||| ||||| || ||||||||| | ||||| | ||| || ||| | Sbjct 478 CAGGGCGTCCAGCACAAACGCCATCATCAACCGTCGGTTCCACATCGCATAGGTCTGTGC 537 Query 137704 CCAGGCGACGGCTTCCACGTAGTCGTGGAACT--CCGGCTCGCCTTCGCAGAGCCAAGCA 137761 ||| | || || | | ||| || ||| | ||| ||| || ||| | || Sbjct 538 CCACTCCACCGCGGCGATGTACTCCGTGAAGTGGACGG--TGCCCTCTGTGAGGTAGGCG 595 Query 137762 AGGTCCTTGTCCAGCGGCTTGCGCCCGTCACGGCGCAGCATCATCTCCTT---GGCCTTC 137818 |||||||||| | || || || || | | |||| | ||| ||||| |||| Sbjct 596 AGGTCCTTGTGCGGCAGCGTGTGCAC----CAGCGC--CCCCATGTCCTTCTGGGCCAGA 649 Query 137819 TCGATGAAGATGCGGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACC 137878 | ||| || ||| ||||||| ||| || | |||||||| |||||||| ||||||||| Sbjct 650 GCAATGTAGGTGCTGCCGATGCGGTTACC-AATCCGCGCGACCCCGAGTGCAGCATCACC 708 Query 137879 CAGACGCGCTG----ATC---CTCG---TCGAGGCAGACCTCGATGAAGTGGTTGCCGCC 137928 || ||| |||| ||| ||| || ||||| ||||||||||| ||||| || Sbjct 709 CACACGTGCTGCTGAATCGGGGTCGTTATCCAGGCACACCTCGATGAAATGGTTCCCAGT 768 Query 137929 GCCCAGGGTGCCCAGTTGG 137947 ||| || ||||| || ||| Sbjct 769 GCCGAGCGTGCCGAGGTGG 787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709608292946560