Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000442495.1_202013-07-31] 12,772 sequences; 27,283,778 total letters Query= NC_019411.1 Length=219216 Score E Sequences producing significant alignments: (Bits) Value seq4432 140 5e-28 seq3961 140 5e-28 seq3719 134 2e-26 seq5035 86.0 9e-12 >seq4432 Length=1001 Score = 140 bits (154), Expect = 5e-28 Identities = 438/668 (66%), Gaps = 44/668 (7%) Strand=Plus/Minus Query 136078 CACGCCGGCGTCCTTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGT 136137 ||||||||||||||||||||||||||| |||| |||||| | ||||| |||| || Sbjct 707 CACGCCGGCGTCCTTGCGGCACTCCACTCCCTGAGTGGCCGCCACGTGGTCGGCCAGCGT 648 Query 136138 GAAG-GTCGCCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACGAGC 136196 |||| | ||| | | | | || || | || || || |||||||| ||||| || | Sbjct 647 GAAGCGGCGCTTCGTCTCGCCTCTGCTGAAGCG-GCGCCCGGCGCCGTGGGAGCAGGAAC 589 Query 136197 AGAACGAGTCCGCGTTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGG 136256 || | | | ||||||||| |||||||| |||||| || ||||| || |||| Sbjct 588 AGTAGCTGCTCATGTTGCCCTTCCCGCGCACAATGTAGCTGCGCGCGCCCATGGACCCGG 529 Query 136257 GGATGATCCCGAACTGGTC-CTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACC 136315 ||| || | ||| || | | | ||| || || ||||||||||| || | | || Sbjct 528 GGACGACCGCGAGCTCGCCGCGCCTG-GCGGAGGTGGCGCCCTTGCGAGTGAGCCACACG 470 Query 136316 CACT-CGTCGAAGTGGAATTC--------CTTCTGGACGTAGTTGTGGTGGCAGTTCACC 136366 || | ||| |||| || | || ||||||||||||||||||||||| Sbjct 469 GCCTCCCCCGACGTGGCATCCACCACGAATCGCTCCACGTAGTTGTGGTGGCAGTTCACG 410 Query 136367 GCTTCCTTG---TCCGTCTTGA-----ACGGCGGCAGGCCCGACGC-TCGCATGGCCTCC 136417 || | | | ||| || || |||| | ||| | ||| |||| ||| ||| Sbjct 409 GCATGCGCGCCATCCACCTCGAATGCGACGGACGGGGGCAGGGCGCGGCGCAGGGCGTCC 350 Query 136418 AGGACCCGGACCATCATCATCTCGCGGTTGATCCGCGCGAAGTCCTGGCCCCAGGCGACG 136477 || || ||||||||| | ||||| | ||| || ||| |||| | || Sbjct 349 AGCACAAACGCCATCATCAACCGTCGGTTCCACATCGCATAGGTCTGTGCCCACTCCACC 290 Query 136478 GCTTCCACGTAGTCGTGGAACT--CCGGCTCGCCTTCGCAGAGCCAAGCAAGGTCCTTGT 136535 || | | ||| || ||| | ||| ||| || ||| | || |||||||||| Sbjct 289 GCGGCGATGTACTCCGTGAAGTGGACGG--TGCCCTCTGTGAGGTAGGCGAGGTCCTTGT 232 Query 136536 CCAGCGGCTTACGCCCGTCACGGCGCAGCATCATCTCCTT---GGCCTTCTCGATGAAGA 136592 | || || | || | | |||| | ||| ||||| |||| | ||| || Sbjct 231 GCGGCAGCGTGTGCAC----CAGCGC--CCCCATGTCCTTCTGGGCCAGAGCAATGTAGG 178 Query 136593 TGCGGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGACGCGCT 136652 ||| ||||||| ||| || | |||||||| |||||||| ||||||||||| ||| ||| Sbjct 177 TGCTGCCGATGCGGTTACCAATCCCGCGCGACCCCGAGTGCAGCATCACCCACACGTGCT 118 Query 136653 ---------GGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCCAGGGTGC 136703 |||| | || ||||| ||||||||||| ||||| || ||| || |||| Sbjct 117 GCTGAATGGGGTCGTTATCCAGGCACACCTCGATGAAATGGTTCCCAGTGCCGAGCGTGC 58 Query 136704 CCAGTTGG 136711 | || ||| Sbjct 57 CGAGGTGG 50 >seq3961 Length=1262 Score = 140 bits (154), Expect = 5e-28 Identities = 438/668 (66%), Gaps = 44/668 (7%) Strand=Plus/Plus Query 136078 CACGCCGGCGTCCTTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGT 136137 ||||||||||||||||||||||||||| |||| |||||| | ||||| |||| || Sbjct 276 CACGCCGGCGTCCTTGCGGCACTCCACTCCCTGAGTGGCCGCCACGTGGTCGGCCAGCGT 335 Query 136138 GAAG-GTCGCCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACGAGC 136196 |||| | ||| | | | | || || | || || || |||||||| ||||| || | Sbjct 336 GAAGCGGCGCTTCGTCTCGCCTCTGCTGAAGCG-GCGCCCGGCGCCGTGGGAGCAGGAAC 394 Query 136197 AGAACGAGTCCGCGTTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGG 136256 || | | | ||||||||| |||||||| |||||| || ||||| || |||| Sbjct 395 AGTAGCTGCTCATGTTGCCCTTCCCGCGCACAATGTAGCTGCGCGCGCCCATGGACCCGG 454 Query 136257 GGATGATCCCGAACTGGTC-CTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACC 136315 ||| || | ||| || | | | ||| || || ||||||||||| || | | || Sbjct 455 GGACGACCGCGAGCTCGCCGCGCCTG-GCGGAGGTGGCGCCCTTGCGAGTGAGCCACACG 513 Query 136316 CACT-CGTCGAAGTGGAATTC--------CTTCTGGACGTAGTTGTGGTGGCAGTTCACC 136366 || | ||| |||| || | || ||||||||||||||||||||||| Sbjct 514 GCCTCCCCCGACGTGGCATCCACCACGAATCGCTCCACGTAGTTGTGGTGGCAGTTCACG 573 Query 136367 GCTTCCTTG---TCCGTCTTGA-----ACGGCGGCAGGCCCGACGC-TCGCATGGCCTCC 136417 || | | | ||| || || |||| | ||| | ||| |||| ||| ||| Sbjct 574 GCATGCGCGCCATCCACCTCGAATGCGACGGACGGGGGCAGGGCGCGGCGCAGGGCGTCC 633 Query 136418 AGGACCCGGACCATCATCATCTCGCGGTTGATCCGCGCGAAGTCCTGGCCCCAGGCGACG 136477 || || ||||||||| | ||||| | ||| || ||| |||| | || Sbjct 634 AGCACAAACGCCATCATCAACCGTCGGTTCCACATCGCATAGGTCTGTGCCCACTCCACC 693 Query 136478 GCTTCCACGTAGTCGTGGAACT--CCGGCTCGCCTTCGCAGAGCCAAGCAAGGTCCTTGT 136535 || | | ||| || ||| | ||| ||| || ||| | || |||||||||| Sbjct 694 GCGGCGATGTACTCCGTGAAGTGGACGG--TGCCCTCTGTGAGGTAGGCGAGGTCCTTGT 751 Query 136536 CCAGCGGCTTACGCCCGTCACGGCGCAGCATCATCTCCTT---GGCCTTCTCGATGAAGA 136592 | || || | || | | |||| | ||| ||||| |||| | ||| || Sbjct 752 GCGGCAGCGTGTGCAC----CAGCGC--CCCCATGTCCTTCTGGGCCAGAGCAATGTAGG 805 Query 136593 TGCGGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGACGCGCT 136652 ||| ||||||| ||| || | |||||||| |||||||| ||||||||||| ||| ||| Sbjct 806 TGCTGCCGATGCGGTTACCAATCCCGCGCGACCCCGAGTGCAGCATCACCCACACGTGCT 865 Query 136653 ---------GGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCCAGGGTGC 136703 |||| | || ||||| ||||||||||| ||||| || ||| || |||| Sbjct 866 GCTGAATGGGGTCGTTATCCAGGCACACCTCGATGAAATGGTTCCCAGTGCCGAGCGTGC 925 Query 136704 CCAGTTGG 136711 | || ||| Sbjct 926 CGAGGTGG 933 >seq3719 Length=1599 Score = 134 bits (148), Expect = 2e-26 Identities = 438/669 (65%), Gaps = 46/669 (7%) Strand=Plus/Plus Query 136078 CACGCCGGCGTCCTTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGT 136137 ||||||||||||||||||||||||||| |||| |||||| | ||||| |||| || Sbjct 130 CACGCCGGCGTCCTTGCGGCACTCCACTCCCTGAGTGGCCGCCACGTGGTCGGCCAGCGT 189 Query 136138 GAAG-GTCGCCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACGAGC 136196 |||| | ||| | | | | || || | || || || |||||||| ||||| || | Sbjct 190 GAAGCGGCGCTTCGTCTCGCCTCTGCTGAAGCG-GCGCCCGGCGCCGTGGGAGCAGGAAC 248 Query 136197 AGAACGAGTCCGCGTTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGG 136256 || | | | ||||||||| |||||||| |||||| || ||||| || |||| Sbjct 249 AGTAGCTGCTCATGTTGCCCTTCCCGCGCACAATGTAGCTGCGCGCGCCCATGGACCCGG 308 Query 136257 GGATGATCCCGAACTGGTC-CTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACC 136315 ||| || | ||| || | | | ||| || || ||||||||||| || | | || Sbjct 309 GGACGACCGCGAGCTCGCCGCGCCTG-GCGGAGGTGGCGCCCTTGCGAGTGAGCCACACG 367 Query 136316 CACT-CGTCGAAGTGGAATTC--------CTTCTGGACGTAGTTGTGGTGGCAGTTCACC 136366 || | ||| |||| || | || ||||||||||||||||||||||| Sbjct 368 GCCTCCCCCGACGTGGCATCCACCACGAATCGCTCCACGTAGTTGTGGTGGCAGTTCACG 427 Query 136367 GCTTCCTTG---TCCGTCTTGA-----ACGGCGGCAGGCCCGACGC-TCGCATGGCCTCC 136417 || | | | ||| || || |||| | ||| | ||| |||| ||| ||| Sbjct 428 GCATGCGCGCCATCCACCTCGAATGCGACGGACGGGGGCAGGGCGCGGCGCAGGGCGTCC 487 Query 136418 AGGACCCGGACCATCATCATCTCGCGGTTGATCCGCGCGAAGTCCTGGCCCCAGGCGACG 136477 || || ||||||||| | ||||| | ||| || ||| |||| | || Sbjct 488 AGCACAAACGCCATCATCAACCGTCGGTTCCACATCGCATAGGTCTGTGCCCACTCCACC 547 Query 136478 GCTTCCACGTAGTCGTGGAACT--CCGGCTCGCCTTCGCAGAGCCAAGCAAGGTCCTTGT 136535 || | | ||| || ||| | ||| ||| || ||| | || |||||||||| Sbjct 548 GCGGCGATGTACTCCGTGAAGTGGACGG--TGCCCTCTGTGAGGTAGGCGAGGTCCTTGT 605 Query 136536 CCAGCGGCTTACGCCCGTCACGGCGCAGCATCATCTCCTT---GGCCTTCTCGATGAAGA 136592 | || || | || | | |||| | ||| ||||| |||| | ||| || Sbjct 606 GCGGCAGCGTGTGCAC----CAGCGC--CCCCATGTCCTTCTGGGCCAGAGCAATGTAGG 659 Query 136593 TGCGGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGACGCGCT 136652 ||| ||||||| ||| || | |||||||| |||||||| ||||||||||| ||| ||| Sbjct 660 TGCTGCCGATGCGGTTACC-AATCCGCGCGACCCCGAGTGCAGCATCACCCACACGTGCT 718 Query 136653 ----------GGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCCAGGGTG 136702 |||| | || ||||| ||||||||||| ||||| || ||| || ||| Sbjct 719 GCTGAATCGGGGTCGTTATCCAGGCACACCTCGATGAAATGGTTCCCAGTGCCGAGCGTG 778 Query 136703 CCCAGTTGG 136711 || || ||| Sbjct 779 CCGAGGTGG 787 >seq5035 Length=1328 Score = 86.0 bits (94), Expect = 9e-12 Identities = 99/135 (73%), Gaps = 9/135 (7%) Strand=Plus/Minus Query 136586 ATGAAGATGCGGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAG 136645 ||| || ||| ||||||| ||| || | |||||||| |||||||| ||||||||||| Sbjct 1013 ATGTAGGTGCTGCCGATGCGGTTACCAATCCCGCGCGACCCCGAGTGCAGCATCACCCAC 954 Query 136646 ACGCGCT---------GGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCC 136696 ||| ||| |||| | || ||||| ||||||||||| ||||| || ||| Sbjct 953 ACGTGCTGCTGAATGGGGTCGTTATCCAGGCACACCTCGATGAAATGGTTCCCAGTGCCG 894 Query 136697 AGGGTGCCCAGTTGG 136711 || ||||| || ||| Sbjct 893 AGCGTGCCGAGGTGG 879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 701251227365120