Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000442495.1_202013-07-31] 12,772 sequences; 27,283,778 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq9219 132 3e-25 seq7322 132 3e-25 >seq9219 Length=2396 Score = 132 bits (146), Expect = 3e-25 Identities = 143/187 (76%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 474688 CAAAATGAAACAAACCGCGAGCTCAT-ATCTTGGACAAGAAGTAACTGATGCAGTAATTA 474746 |||||||||| |||| || || || || | ||| |||||||||||||||| || || | Sbjct 631 CAAAATGAAAAAAACAGC-AGAGGATTATTTAGGAGAAGAAGTAACTGATGCTGTTATAA 689 Query 474747 CTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTG 474806 |||| |||||||| ||||| ||| |||| | ||||| || |||||||| || || || | Sbjct 690 CTGTGCCAGCATACTTTAACGATAGTCAAAGACAAGCGACAAAAGATGCTGGCAGGATAG 749 Query 474807 CAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTC 474866 |||| ||||| ||| | ||||| || ||||| || || || || || |||| |||| Sbjct 750 CAGGGCTTAACGTTAAGAGGATTATAAACGAACCGACTGCTGCAGCGCTAGCTTTTGGTT 809 Query 474867 TTGATAA 474873 | ||||| Sbjct 810 TAGATAA 816 >seq7322 Length=2437 Score = 132 bits (146), Expect = 3e-25 Identities = 143/187 (76%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 474688 CAAAATGAAACAAACCGCGAGCTCAT-ATCTTGGACAAGAAGTAACTGATGCAGTAATTA 474746 |||||||||| |||| || || || || | ||| |||||||||||||||| || || | Sbjct 691 CAAAATGAAAAAAACAGC-AGAGGATTATTTAGGAGAAGAAGTAACTGATGCTGTTATAA 749 Query 474747 CTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTG 474806 |||| |||||||| ||||| ||| |||| | ||||| || |||||||| || || || | Sbjct 750 CTGTGCCAGCATACTTTAACGATAGTCAAAGACAAGCGACAAAAGATGCTGGCAGGATAG 809 Query 474807 CAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTC 474866 |||| ||||| ||| | ||||| || ||||| || || || || || |||| |||| Sbjct 810 CAGGGCTTAACGTTAAGAGGATTATAAACGAACCGACTGCTGCAGCGCTAGCTTTTGGTT 869 Query 474867 TTGATAA 474873 | ||||| Sbjct 870 TAGATAA 876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267631346950256