Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000442495.1_202013-07-31] 12,772 sequences; 27,283,778 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq7115 161 3e-34 seq9151 91.5 4e-13 seq8268 91.5 4e-13 seq6883 91.5 4e-13 seq5779 91.5 4e-13 seq5536 91.5 4e-13 >seq7115 Length=2817 Score = 161 bits (178), Expect = 3e-34 Identities = 330/484 (68%), Gaps = 16/484 (3%) Strand=Plus/Plus Query 288874 AATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTT 288933 || || || || | |||||| | ||||||||| || || | ||| |||| | || Sbjct 1426 AAAGCAGGATCAAGTATATCTGGTCTGTTTGTGGCGGCTATTACGACAACACCTTGTCCA 1485 Query 288934 TGCTTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTT 288993 || ||| |||||||| || |||||||| | ||||||||| | || ||||| Sbjct 1486 GCCTCAAACCCATCCATTTCAACCAACATTTGATTTAATGTTTGTTCACGCTCGTCATTA 1545 Query 288994 GAACCTCTTGAATCACCCGAATCGCTCCttttttt--ACCAACAGCATCAATTTCGTCAA 289051 ||||| | |||| | ||||| | ||||||||||||||| || || | Sbjct 1546 CCACCTCC---AACACCTG-----CTCCTCGCTGACGACCAACAGCATCAATCTCATCTA 1597 Query 289052 TGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATG 289111 | ||||| | ||| || |||| || | | ||| | |||| | || |||||||| || | Sbjct 1598 TAAAAATAATACATGGCGAATGTTTTTTTGCATTATCAAACATATCCCTTACACGAGAAG 1657 Query 289112 CTCCAAGACCAACATACATTTCTACAAATTCAGAAGC--GGATACTTGAATGAATGTTAC 289169 | |||| |||||| ||||||| ||||| |||||| | |||||| || ||| | || Sbjct 1658 CGCCAACTCCAACAAACATTTCAACAAAATCAGAACCAGAGATACT--AAAGAAAGGAAC 1715 Query 289170 ATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTC 289229 ||| || || ||||| ||||| || ||||| | || || |||||||| |||| ||| Sbjct 1716 ATTAGCCTCACCTGCAACTGCTCTAGCCAGCAAAGTTTTTCCTGTTCCCGGTGATCCTAT 1775 Query 289230 TAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCT-CTTTA 289288 | || ||| || | |||| | | ||| || | | | | | |||| ||||| Sbjct 1776 CATTAAAACACCTCTAGGTATACGTCCACCAAGTTTCTGAAACCT-TGATGGCTCCTTTA 1834 Query 289289 AAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAA 289348 |||| ||||| | ||| | | || | ||| || ||||||||||| || ||||| |||| Sbjct 1835 AAAAATCTACCAGTTCTTGGACATCCTCTTTGGCTTCATCACATCCAGCAACATCTGCAA 1894 Query 289349 AAGT 289352 | || Sbjct 1895 ATGT 1898 >seq9151 Length=6141 Score = 91.5 bits (100), Expect = 4e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 155589 ATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAG 155648 || || ||||| || || ||||| ||||| | | | |||| || | ||||| | Sbjct 1426 ATCGAGGCCAGGTTGCACACCGCCGTCTCGTCCTTCGAGGTGTACTCGATGATCTCCGTG 1485 Query 155649 CACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCA 155708 ||||||||||| | |||||||||||| | |||| |||||| || || ||| || ||| Sbjct 1486 CACAGGTTAGAGCACTTGATGGTGCCGAGGTTCTGCTGGTTCGACTTGGCGTTGCAGGCA 1545 Query 155709 TCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAAT 155758 |||||||| || ||| | || || || || ||||| | |||||||| Sbjct 1546 TCCTTGTAGAGCATGAACGGCACGCCCGTTTCGATCTGAGACTCCAGAAT 1595 >seq8268 Length=4088 Score = 91.5 bits (100), Expect = 4e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 155589 ATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAG 155648 || || ||||| || || ||||| ||||| | | | |||| || | ||||| | Sbjct 1297 ATCGAGGCCAGGTTGCACACCGCCGTCTCGTCCTTCGAGGTGTACTCGATGATCTCCGTG 1356 Query 155649 CACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCA 155708 ||||||||||| | |||||||||||| | |||| |||||| || || ||| || ||| Sbjct 1357 CACAGGTTAGAGCACTTGATGGTGCCGAGGTTCTGCTGGTTCGACTTGGCGTTGCAGGCA 1416 Query 155709 TCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAAT 155758 |||||||| || ||| | || || || || ||||| | |||||||| Sbjct 1417 TCCTTGTAGAGCATGAACGGCACGCCCGTTTCGATCTGAGACTCCAGAAT 1466 >seq6883 Length=2519 Score = 91.5 bits (100), Expect = 4e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 155589 ATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAG 155648 || || ||||| || || ||||| ||||| | | | |||| || | ||||| | Sbjct 838 ATCGAGGCCAGGTTGCACACCGCCGTCTCGTCCTTCGAGGTGTACTCGATGATCTCCGTG 779 Query 155649 CACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCA 155708 ||||||||||| | |||||||||||| | |||| |||||| || || ||| || ||| Sbjct 778 CACAGGTTAGAGCACTTGATGGTGCCGAGGTTCTGCTGGTTCGACTTGGCGTTGCAGGCA 719 Query 155709 TCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAAT 155758 |||||||| || ||| | || || || || ||||| | |||||||| Sbjct 718 TCCTTGTAGAGCATGAACGGCACGCCCGTTTCGATCTGAGACTCCAGAAT 669 >seq5779 Length=2238 Score = 91.5 bits (100), Expect = 4e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 155589 ATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAG 155648 || || ||||| || || ||||| ||||| | | | |||| || | ||||| | Sbjct 942 ATCGAGGCCAGGTTGCACACCGCCGTCTCGTCCTTCGAGGTGTACTCGATGATCTCCGTG 883 Query 155649 CACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCA 155708 ||||||||||| | |||||||||||| | |||| |||||| || || ||| || ||| Sbjct 882 CACAGGTTAGAGCACTTGATGGTGCCGAGGTTCTGCTGGTTCGACTTGGCGTTGCAGGCA 823 Query 155709 TCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAAT 155758 |||||||| || ||| | || || || || ||||| | |||||||| Sbjct 822 TCCTTGTAGAGCATGAACGGCACGCCCGTTTCGATCTGAGACTCCAGAAT 773 >seq5536 Length=1685 Score = 91.5 bits (100), Expect = 4e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 155589 ATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAG 155648 || || ||||| || || ||||| ||||| | | | |||| || | ||||| | Sbjct 1221 ATCGAGGCCAGGTTGCACACCGCCGTCTCGTCCTTCGAGGTGTACTCGATGATCTCCGTG 1280 Query 155649 CACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCA 155708 ||||||||||| | |||||||||||| | |||| |||||| || || ||| || ||| Sbjct 1281 CACAGGTTAGAGCACTTGATGGTGCCGAGGTTCTGCTGGTTCGACTTGGCGTTGCAGGCA 1340 Query 155709 TCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAAT 155758 |||||||| || ||| | || || || || ||||| | |||||||| Sbjct 1341 TCCTTGTAGAGCATGAACGGCACGCCCGTTTCGATCTGAGACTCCAGAAT 1390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471576749928164