Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000442495.1_202013-07-31] 12,772 sequences; 27,283,778 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq9151 125 6e-24 seq8268 125 6e-24 seq6883 125 6e-24 seq5779 125 6e-24 seq7561 116 3e-21 seq5572 87.8 2e-12 >seq9151 Length=6141 Score = 125 bits (138), Expect = 6e-24 Identities = 271/405 (67%), Gaps = 3/405 (1%) Strand=Plus/Plus Query 139374 CATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAA 139433 |||||||| ||| ||| | ||| |||||| ||||||| || ||||| ||||| | Sbjct 1719 CATGAGCGTCCACTTGCCCTCACTCTTCACGCGCTTCATGAAGAGGTCCGGGATCCAGAG 1778 Query 139434 AGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAG 139493 ||| | | | |||||||| || || ||| || |||| || |||||| || Sbjct 1779 CGCGTAGAAGAGGTCGCGCGCGCGCTGGTCCTCCTTGCCAGTGTTGCGCTTCATGAGCAG 1838 Query 139494 GAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTT 139553 ||| || || | ||| |||||||| || || || || ||||| | ||||| || || || Sbjct 1839 GAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTACATGGCGAAGGCGCCCTTGCGCTT 1898 Query 139554 ---GCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAG 139610 ||| || ||||| |||| || | | || || | ||||| | ||||||| || Sbjct 1899 ACCGCCGCCCTGATCAACGTAGCGGGCCGTGTTGTTCCACACGCGGATCATCGGCATGAG 1958 Query 139611 ACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGTAC 139670 ||| ||| || |||||||||| |||| ||| | || |||| || || | Sbjct 1959 GCCGTTCGACGTGCCGTTGGTGCCCGCGATGTAGCTGCCGGCCGCGCGGATGTTGTGGAT 2018 Query 139671 ATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAATGTCTCGTA 139730 || |||||| || ||||| | ||| || | |||| || | || ||||| Sbjct 2019 ATGGATGCCAATGCCGCCAGCCGCCTTGCTGATCACGGCGCACTCCTTCAGCGTGTCGTA 2078 Query 139731 TATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGA 139775 || || ||||||||||||| ||||| |||||| ||||| || Sbjct 2079 GATGCCCTCGATGCTGTCGTCCTTCATCGCGACCAGGAAGCACGA 2123 >seq8268 Length=4088 Score = 125 bits (138), Expect = 6e-24 Identities = 271/405 (67%), Gaps = 3/405 (1%) Strand=Plus/Plus Query 139374 CATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAA 139433 |||||||| ||| ||| | ||| |||||| ||||||| || ||||| ||||| | Sbjct 1590 CATGAGCGTCCACTTGCCCTCACTCTTCACGCGCTTCATGAAGAGGTCCGGGATCCAGAG 1649 Query 139434 AGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAG 139493 ||| | | | |||||||| || || ||| || |||| || |||||| || Sbjct 1650 CGCGTAGAAGAGGTCGCGCGCGCGCTGGTCCTCCTTGCCAGTGTTGCGCTTCATGAGCAG 1709 Query 139494 GAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTT 139553 ||| || || | ||| |||||||| || || || || ||||| | ||||| || || || Sbjct 1710 GAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTACATGGCGAAGGCGCCCTTGCGCTT 1769 Query 139554 ---GCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAG 139610 ||| || ||||| |||| || | | || || | ||||| | ||||||| || Sbjct 1770 ACCGCCGCCCTGATCAACGTAGCGGGCCGTGTTGTTCCACACGCGGATCATCGGCATGAG 1829 Query 139611 ACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGTAC 139670 ||| ||| || |||||||||| |||| ||| | || |||| || || | Sbjct 1830 GCCGTTCGACGTGCCGTTGGTGCCCGCGATGTAGCTGCCGGCCGCGCGGATGTTGTGGAT 1889 Query 139671 ATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAATGTCTCGTA 139730 || |||||| || ||||| | ||| || | |||| || | || ||||| Sbjct 1890 ATGGATGCCAATGCCGCCAGCCGCCTTGCTGATCACGGCGCACTCCTTCAGCGTGTCGTA 1949 Query 139731 TATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGA 139775 || || ||||||||||||| ||||| |||||| ||||| || Sbjct 1950 GATGCCCTCGATGCTGTCGTCCTTCATCGCGACCAGGAAGCACGA 1994 >seq6883 Length=2519 Score = 125 bits (138), Expect = 6e-24 Identities = 271/405 (67%), Gaps = 3/405 (1%) Strand=Plus/Minus Query 139374 CATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAA 139433 |||||||| ||| ||| | ||| |||||| ||||||| || ||||| ||||| | Sbjct 545 CATGAGCGTCCACTTGCCCTCACTCTTCACGCGCTTCATGAAGAGGTCCGGGATCCAGAG 486 Query 139434 AGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAG 139493 ||| | | | |||||||| || || ||| || |||| || |||||| || Sbjct 485 CGCGTAGAAGAGGTCGCGCGCGCGCTGGTCCTCCTTGCCAGTGTTGCGCTTCATGAGCAG 426 Query 139494 GAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTT 139553 ||| || || | ||| |||||||| || || || || ||||| | ||||| || || || Sbjct 425 GAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTACATGGCGAAGGCGCCCTTGCGCTT 366 Query 139554 ---GCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAG 139610 ||| || ||||| |||| || | | || || | ||||| | ||||||| || Sbjct 365 ACCGCCGCCCTGATCAACGTAGCGGGCCGTGTTGTTCCACACGCGGATCATCGGCATGAG 306 Query 139611 ACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGTAC 139670 ||| ||| || |||||||||| |||| ||| | || |||| || || | Sbjct 305 GCCGTTCGACGTGCCGTTGGTGCCCGCGATGTAGCTGCCGGCCGCGCGGATGTTGTGGAT 246 Query 139671 ATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAATGTCTCGTA 139730 || |||||| || ||||| | ||| || | |||| || | || ||||| Sbjct 245 ATGGATGCCAATGCCGCCAGCCGCCTTGCTGATCACGGCGCACTCCTTCAGCGTGTCGTA 186 Query 139731 TATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGA 139775 || || ||||||||||||| ||||| |||||| ||||| || Sbjct 185 GATGCCCTCGATGCTGTCGTCCTTCATCGCGACCAGGAAGCACGA 141 >seq5779 Length=2238 Score = 125 bits (138), Expect = 6e-24 Identities = 271/405 (67%), Gaps = 3/405 (1%) Strand=Plus/Minus Query 139374 CATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAA 139433 |||||||| ||| ||| | ||| |||||| ||||||| || ||||| ||||| | Sbjct 649 CATGAGCGTCCACTTGCCCTCACTCTTCACGCGCTTCATGAAGAGGTCCGGGATCCAGAG 590 Query 139434 AGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAG 139493 ||| | | | |||||||| || || ||| || |||| || |||||| || Sbjct 589 CGCGTAGAAGAGGTCGCGCGCGCGCTGGTCCTCCTTGCCAGTGTTGCGCTTCATGAGCAG 530 Query 139494 GAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTT 139553 ||| || || | ||| |||||||| || || || || ||||| | ||||| || || || Sbjct 529 GAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTACATGGCGAAGGCGCCCTTGCGCTT 470 Query 139554 ---GCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAG 139610 ||| || ||||| |||| || | | || || | ||||| | ||||||| || Sbjct 469 ACCGCCGCCCTGATCAACGTAGCGGGCCGTGTTGTTCCACACGCGGATCATCGGCATGAG 410 Query 139611 ACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGTAC 139670 ||| ||| || |||||||||| |||| ||| | || |||| || || | Sbjct 409 GCCGTTCGACGTGCCGTTGGTGCCCGCGATGTAGCTGCCGGCCGCGCGGATGTTGTGGAT 350 Query 139671 ATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAATGTCTCGTA 139730 || |||||| || ||||| | ||| || | |||| || | || ||||| Sbjct 349 ATGGATGCCAATGCCGCCAGCCGCCTTGCTGATCACGGCGCACTCCTTCAGCGTGTCGTA 290 Query 139731 TATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGA 139775 || || ||||||||||||| ||||| |||||| ||||| || Sbjct 289 GATGCCCTCGATGCTGTCGTCCTTCATCGCGACCAGGAAGCACGA 245 >seq7561 Length=2662 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 24700 TACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGC 24759 ||| |||||||||||| | || ||||| ||||| || || || | || || || || || Sbjct 2422 TACCATGCAGATCTTTGTGAAGACGCTGACCGGCAAGACGATCGCCCTGGAGGTGGAGGC 2481 Query 24760 CACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGA 24819 | |||||| | || | || || |||||||| ||||| || || || ||||| || Sbjct 2482 GAGCGACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGA 2541 Query 24820 TCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTA 24879 || || || |||||||||| || || ||||||||||| | | | | || || Sbjct 2542 CCAGCAGCGCCTGATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGTACGCTCGCGGACTA 2601 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || ||||| ||||| || ||| ||||| | || ||||||| ||| Sbjct 2602 CAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGTCTGCGCGGCGGC 2653 >seq5572 Length=1533 Score = 87.8 bits (96), Expect = 2e-12 Identities = 165/243 (68%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || | ||||| || || || | | Sbjct 652 ATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACGATCGCCCTCGAGGTCGAGGCGAGC 711 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 712 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 771 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| || || || ||||| ||||| | | | | || || ||| Sbjct 772 CAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGAGGGCCGCACGCTCGCGGACTACAAC 831 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCCA 24943 ||||| ||||| || || || ||| | ||| |||| | ||||| || | | ||||| Sbjct 832 ATTCAGAAGGAGTCCACGCTGCACCTCGTGCTGCGCCTCCGCGGCGGTGTGATGGAGCCC 891 Query 24944 ACG 24946 ||| Sbjct 892 ACG 894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449825773848160