Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000442495.1_202013-07-31] 12,772 sequences; 27,283,778 total letters Query= NC_023006.1 Length=43564 Score E Sequences producing significant alignments: (Bits) Value seq4432 95.1 3e-15 seq3961 95.1 3e-15 seq3719 95.1 3e-15 >seq4432 Length=1001 Score = 95.1 bits (104), Expect = 3e-15 Identities = 169/244 (69%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 37204 GGCGACCTGGGCATCATCCCTGGCTCGATGGGTGCGAAGTCATTCATCGTTCGCGGCAAG 37263 ||||| || | || |||| || || ||||| ||| | ||| || ||||| ||| Sbjct 510 GGCGAGCTCGCGGTCGTCCCCGGGTCCATGGGCGCGCGCAGCTACATTGTGCGCGGGAAG 569 Query 37264 GGAAAT-TCCGAATCGTTCTGCTCTTGCAGCCACGGTGCCGGTCGAATGATGAGCCGGGC 37322 || || | | | | | ||| || ||| |||||| ||||| || | ||| | | Sbjct 570 GGCAACATGAGCAGC-TACTGTTCCTGCTCCCACGGCGCCGGGCGCCGCTTCAGCAGAGG 628 Query 37323 CGAAGCAAAACGCCGGTTCACAGTCGAGGATCATGAGGCGGCCACCAAAGGTATCGAGTG 37382 ||| | || ||||| ||||| | | || || | ||||||||| | || | ||||| Sbjct 629 CGAGACGAAGCGCCGCTTCACGCTGGCCGACCACGTGGCGGCCACTCAGGGAGTGGAGTG 688 Query 37383 CCGCAAAGATGCCGAAGTGATCGACGAGACGCCAGCGGCTTACAAGGACATCGATGCGGT 37442 |||||| || |||| ||| |||| || || || || || ||||||||||||||||| || Sbjct 689 CCGCAAGGACGCCGGCGTGCTCGATGAAACACCCGCCGCCTACAAGGACATCGATGCCGT 748 Query 37443 CATG 37446 |||| Sbjct 749 CATG 752 >seq3961 Length=1262 Score = 95.1 bits (104), Expect = 3e-15 Identities = 169/244 (69%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 37204 GGCGACCTGGGCATCATCCCTGGCTCGATGGGTGCGAAGTCATTCATCGTTCGCGGCAAG 37263 ||||| || | || |||| || || ||||| ||| | ||| || ||||| ||| Sbjct 473 GGCGAGCTCGCGGTCGTCCCCGGGTCCATGGGCGCGCGCAGCTACATTGTGCGCGGGAAG 414 Query 37264 GGAAAT-TCCGAATCGTTCTGCTCTTGCAGCCACGGTGCCGGTCGAATGATGAGCCGGGC 37322 || || | | | | | ||| || ||| |||||| ||||| || | ||| | | Sbjct 413 GGCAACATGAGCAGC-TACTGTTCCTGCTCCCACGGCGCCGGGCGCCGCTTCAGCAGAGG 355 Query 37323 CGAAGCAAAACGCCGGTTCACAGTCGAGGATCATGAGGCGGCCACCAAAGGTATCGAGTG 37382 ||| | || ||||| ||||| | | || || | ||||||||| | || | ||||| Sbjct 354 CGAGACGAAGCGCCGCTTCACGCTGGCCGACCACGTGGCGGCCACTCAGGGAGTGGAGTG 295 Query 37383 CCGCAAAGATGCCGAAGTGATCGACGAGACGCCAGCGGCTTACAAGGACATCGATGCGGT 37442 |||||| || |||| ||| |||| || || || || || ||||||||||||||||| || Sbjct 294 CCGCAAGGACGCCGGCGTGCTCGATGAAACACCCGCCGCCTACAAGGACATCGATGCCGT 235 Query 37443 CATG 37446 |||| Sbjct 234 CATG 231 >seq3719 Length=1599 Score = 95.1 bits (104), Expect = 3e-15 Identities = 169/244 (69%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 37204 GGCGACCTGGGCATCATCCCTGGCTCGATGGGTGCGAAGTCATTCATCGTTCGCGGCAAG 37263 ||||| || | || |||| || || ||||| ||| | ||| || ||||| ||| Sbjct 327 GGCGAGCTCGCGGTCGTCCCCGGGTCCATGGGCGCGCGCAGCTACATTGTGCGCGGGAAG 268 Query 37264 GGAAAT-TCCGAATCGTTCTGCTCTTGCAGCCACGGTGCCGGTCGAATGATGAGCCGGGC 37322 || || | | | | | ||| || ||| |||||| ||||| || | ||| | | Sbjct 267 GGCAACATGAGCAGC-TACTGTTCCTGCTCCCACGGCGCCGGGCGCCGCTTCAGCAGAGG 209 Query 37323 CGAAGCAAAACGCCGGTTCACAGTCGAGGATCATGAGGCGGCCACCAAAGGTATCGAGTG 37382 ||| | || ||||| ||||| | | || || | ||||||||| | || | ||||| Sbjct 208 CGAGACGAAGCGCCGCTTCACGCTGGCCGACCACGTGGCGGCCACTCAGGGAGTGGAGTG 149 Query 37383 CCGCAAAGATGCCGAAGTGATCGACGAGACGCCAGCGGCTTACAAGGACATCGATGCGGT 37442 |||||| || |||| ||| |||| || || || || || ||||||||||||||||| || Sbjct 148 CCGCAAGGACGCCGGCGTGCTCGATGAAACACCCGCCGCCTACAAGGACATCGATGCCGT 89 Query 37443 CATG 37446 |||| Sbjct 88 CATG 85 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139262075265264