Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000442495.1_202013-07-31] 12,772 sequences; 27,283,778 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq9219 156 3e-32 seq7322 156 3e-32 seq7463 102 6e-16 >seq9219 Length=2396 Score = 156 bits (172), Expect = 3e-32 Identities = 146/186 (78%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 282334 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 282393 |||||| | |||| | || | || |||||||| ||||| || ||||| ||| ||| || Sbjct 817 TTTATCTAAACCAAAAGCTAGCGCTGCAGCAGTCGGTTCGTTTATAATCCTCTTAACGTT 758 Query 282394 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453 ||| || || || || || |||||||| || ||||||||||| ||||||||| ||||| Sbjct 757 AAGCCCTGCTATCCTGCCAGCATCTTTTGTCGCTTGTCTTTGACTATCGTTAAAGTATGC 698 Query 282454 AGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTT 282513 || ||||| ||||| ||||| |||||||||| ||| | |||| | |||||||| ||| Sbjct 697 TGGCACAGTTATAACAGCATCAGTTACTTCTTCTCCTAAATAATCCTCTGCTGTTTTTTT 638 Query 282514 CATTTT 282519 |||||| Sbjct 637 CATTTT 632 Score = 107 bits (118), Expect = 1e-17 Identities = 259/386 (67%), Gaps = 16/386 (4%) Strand=Plus/Minus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||| |||| | ||||||||||||||| | ||||||||| ||||| ||||| || | Sbjct 1734 GCAGAAACATGCAAAATACCATTGGCATCAATATCAAATGTTACTTCTATTTGCGGTATT 1675 Query 281486 CCTCTCTGAGCA-GGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 281544 || | |||| | || || || ||||| |||||||| || ||| ||||| | Sbjct 1674 CCAC-GTGAGGATGGAGGTATGCCTTCTAAATTAAACTCCCCGAGAGCCTTATTCCCAGA 1616 Query 281545 AGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATA 281604 || | || |||||| || | |||||| || ||||| || ||||||||| | Sbjct 1615 AGCTATTTCTCGTTCTCCTTGATAAATTTTTATTGTAACAGAAGGCTGATTATCTTCAGC 1556 Query 281605 AGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 281664 ||| | ||| ||| || | | ||||| ||||||||| | | || || || || Sbjct 1555 AGTAGAAAAAACTTGAGAAAATCTTGTTGGAATAGTTGTGTTTTTCTGTATCATCTTTGT 1496 Query 281665 CATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 281724 ||| | |||||| || |||| |||||||| | || || ||||||| | |||| Sbjct 1495 CATTACACCACCTAGAGTCTCTATGCCAAGAGATAATGGTGTAACATCAAGCA--ACAA- 1439 Query 281725 ATTTTGAAGTTTTTCATCAGTTTGACCA-ACAAGAATAGCTGCTTGAATAGCAGCACCAT 281783 || | || | | ||| |||| | ||| |||| |||||||||||| Sbjct 1438 -----GACATCCTTGCGC----TCTCCAGACAA-TACAGCCCCTTGTATAGCAGCACCAG 1389 Query 281784 ATGCAACAGCTTCATCAGGATTAACA 281809 || || |||||||||||||||||| Sbjct 1388 CAGCCACTGCTTCATCAGGATTAACA 1363 >seq7322 Length=2437 Score = 156 bits (172), Expect = 3e-32 Identities = 146/186 (78%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 282334 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 282393 |||||| | |||| | || | || |||||||| ||||| || ||||| ||| ||| || Sbjct 877 TTTATCTAAACCAAAAGCTAGCGCTGCAGCAGTCGGTTCGTTTATAATCCTCTTAACGTT 818 Query 282394 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453 ||| || || || || || |||||||| || ||||||||||| ||||||||| ||||| Sbjct 817 AAGCCCTGCTATCCTGCCAGCATCTTTTGTCGCTTGTCTTTGACTATCGTTAAAGTATGC 758 Query 282454 AGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTT 282513 || ||||| ||||| ||||| |||||||||| ||| | |||| | |||||||| ||| Sbjct 757 TGGCACAGTTATAACAGCATCAGTTACTTCTTCTCCTAAATAATCCTCTGCTGTTTTTTT 698 Query 282514 CATTTT 282519 |||||| Sbjct 697 CATTTT 692 Score = 107 bits (118), Expect = 1e-17 Identities = 259/386 (67%), Gaps = 16/386 (4%) Strand=Plus/Minus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||| |||| | ||||||||||||||| | ||||||||| ||||| ||||| || | Sbjct 1794 GCAGAAACATGCAAAATACCATTGGCATCAATATCAAATGTTACTTCTATTTGCGGTATT 1735 Query 281486 CCTCTCTGAGCA-GGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 281544 || | |||| | || || || ||||| |||||||| || ||| ||||| | Sbjct 1734 CCAC-GTGAGGATGGAGGTATGCCTTCTAAATTAAACTCCCCGAGAGCCTTATTCCCAGA 1676 Query 281545 AGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATA 281604 || | || |||||| || | |||||| || ||||| || ||||||||| | Sbjct 1675 AGCTATTTCTCGTTCTCCTTGATAAATTTTTATTGTAACAGAAGGCTGATTATCTTCAGC 1616 Query 281605 AGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 281664 ||| | ||| ||| || | | ||||| ||||||||| | | || || || || Sbjct 1615 AGTAGAAAAAACTTGAGAAAATCTTGTTGGAATAGTTGTGTTTTTCTGTATCATCTTTGT 1556 Query 281665 CATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 281724 ||| | |||||| || |||| |||||||| | || || ||||||| | |||| Sbjct 1555 CATTACACCACCTAGAGTCTCTATGCCAAGAGATAATGGTGTAACATCAAGCA--ACAA- 1499 Query 281725 ATTTTGAAGTTTTTCATCAGTTTGACCA-ACAAGAATAGCTGCTTGAATAGCAGCACCAT 281783 || | || | | ||| |||| | ||| |||| |||||||||||| Sbjct 1498 -----GACATCCTTGCGC----TCTCCAGACAA-TACAGCCCCTTGTATAGCAGCACCAG 1449 Query 281784 ATGCAACAGCTTCATCAGGATTAACA 281809 || || |||||||||||||||||| Sbjct 1448 CAGCCACTGCTTCATCAGGATTAACA 1423 >seq7463 Length=3513 Score = 102 bits (112), Expect = 6e-16 Identities = 198/290 (68%), Gaps = 2/290 (1%) Strand=Plus/Plus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||| |||| | ||||||||||||||| | ||||||||| ||||| ||||| || | Sbjct 3141 GCAGAAACATGCAAAATACCATTGGCATCAATATCAAATGTTACTTCTATTTGCGGTATT 3200 Query 281486 CCTCTCTGAGCA-GGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 281544 || | |||| | || || || ||||| |||||||| || ||| ||||| | Sbjct 3201 CCAC-GTGAGGATGGAGGTATGCCTTCTAAATTAAACTCCCCGAGAGCCTTATTCCCAGA 3259 Query 281545 AGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATA 281604 || | || |||||| || | |||||| || ||||| || ||||||||| | Sbjct 3260 AGCTATTTCTCGTTCTCCTTGATAAATTTTTATTGTAACAGAAGGCTGATTATCTTCAGC 3319 Query 281605 AGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 281664 ||| | ||| ||| || | | ||||| ||||||||| | | || || || || Sbjct 3320 AGTAGAAAAAACTTGAGAAAATCTTGTTGGAATAGTTGTGTTTTTCTGTATCATCTTTGT 3379 Query 281665 CATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 281714 ||| | |||||| || |||| |||||||| | || || ||||||| Sbjct 3380 CATTACACCACCTAGAGTCTCTATGCCAAGAGATAATGGTGTAACATCAA 3429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740003348774472