Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000442495.1_202013-07-31] 12,772 sequences; 27,283,778 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq7561 116 7e-21 seq4861 111 3e-19 seq4920 105 1e-17 seq5572 98.7 2e-15 >seq7561 Length=2662 Score = 116 bits (128), Expect = 7e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || | |||||| || || || ||||| || || || || | Sbjct 2652 CCGCCGCGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 2593 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || || || || ||||||||||| || | || || || ||||| Sbjct 2592 AGCGTACGGCCCTCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGG 2533 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| || || || || || ||||| || | | || || Sbjct 2532 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 2473 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | ||||||||||| |||| |||||| ||||| |||||||| Sbjct 2472 TCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACAAAGATCTGCAT 2426 >seq4861 Length=995 Score = 111 bits (122), Expect = 3e-19 Identities = 166/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 82576 ATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTAT 82635 ||||| ||| || | || ||||| || | |||||| || || || ||||| || || | Sbjct 464 ATCAC--ACCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGT 407 Query 82636 AATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGAT 82695 | || | || | | || || || || || || ||||||||||| || | || || | Sbjct 406 AGTCCGCGAGCGTGCGGCCCTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGT 347 Query 82696 CTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAG 82755 | ||||| || || ||||| || || ||||| || || || || || ||||| || | | Sbjct 346 CCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCG 287 Query 82756 GTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || |||| | ||||||||||| |||| |||||| || || || ||||| Sbjct 286 CCTCCACCTCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATTTGCAT 232 >seq4920 Length=845 Score = 105 bits (116), Expect = 1e-17 Identities = 165/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 82576 ATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTAT 82635 ||||| ||| || | || ||||| || | |||||| || || || ||||| || || | Sbjct 526 ATCAC--ACCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGT 583 Query 82636 AATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGAT 82695 | || | || | | || || || || || || ||||||||||| || | || || | Sbjct 584 AGTCCGCGAGCGTGCGGCCCTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGT 643 Query 82696 CTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAG 82755 | ||||| || || ||||| || || ||||| || || || | || ||||| || | | Sbjct 644 CCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGCTCTCGATCGTGTCGCTCG 703 Query 82756 GTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || |||| | ||||||||||| |||| |||||| || || || ||||| Sbjct 704 CCTCCACCTCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATTTGCAT 758 >seq5572 Length=1533 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | |||||| || || || ||||| || || || || | || | | || Sbjct 866 CGCAGCACGAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGCGAGCGTGCGGCCC 807 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||| ||||| || | || || || || || || || ||||| Sbjct 806 TCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 747 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || || || || || || || | | || || || | | ||| Sbjct 746 TCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATC 687 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATTTTT 82822 |||||||| |||| ||||| || || |||||||| || || ||||| Sbjct 686 GTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATGATGATGTTTTT 640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981666532569708