Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000442495.1_202013-07-31] 12,772 sequences; 27,283,778 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq4130 212 7e-50 seq2683 212 7e-50 seq716 212 7e-50 seq393 212 7e-50 seq6110 120 4e-22 >seq4130 Length=3478 Score = 212 bits (234), Expect = 7e-50 Identities = 410/593 (69%), Gaps = 14/593 (2%) Strand=Plus/Minus Query 146926 TCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTA 146985 ||||||||||| ||| ||||||||||| ||||| ||||| | | ||||| ||||| Sbjct 2713 TCCACGTGGTTCTTGTACACGTGCGCGTCGCCCAGCGTGTGGATGAGCTCCCCGGGCTTC 2654 Query 146986 AGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGG 147045 || || ||| | | ||| | | | || || | | ||| ||| ||||||||||| Sbjct 2653 AGCCCCGTCGCCTTGGCGATGAGGATAGTCAGGAAGGCGTACGAGGCGATGTTGAAGGGC 2594 Query 147046 ACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCC-CCGT---- 147100 || || ||||||||||| | | |||||||||| ||| |||||| ||| Sbjct 2593 ACACCGAGGCCCATGTCGCAGCTGCGCTGGTACAGCATGCAGCTCAGCTCCTGCGTGTTG 2534 Query 147101 -CGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCC 147159 | |||||| ||||||| |||| ||||||||||||||||||||| | || | Sbjct 2533 GGGTTCACGTAGAACTGGCCGAGGAGGTGGCACGGCGGCAGCGCCATCTTGTCAAGCGCG 2474 Query 147160 GCGGGGTTCCAGGCCGAGACCACCAGCCGCCTG-CTCTCGGGGTTCCTCTTAATCTCTTC 147218 || |||||||| |||| || | |||||| | | | || ||| ||| |||| | | || Sbjct 2473 GCCGGGTTCCACGCCGTGAAGAGCAGCCGGCGGTCGCT-GGGATTCGTCTTGAGCGTCTC 2415 Query 147219 GATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTC-CCGCAGTCCACGT 147277 || | | | | | |||||| ||||||| ||| ||||| ||||| | || | || Sbjct 2414 GACGATGCGCTTGATCTGGTCGACGCCCTTGCCGTCGTAG-TTGTCGTTGAAGGACGTGT 2356 Query 147278 ACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTC 147337 | ||| || ||||| | ||||||||||||||| || ||||||||||| | ||| Sbjct 2355 AGTCGGCGCCGAAGTGGCGCCACTGGAAGCCGTAGACGGGCCCCAGGTC-CATCTCTTCG 2297 Query 147338 T-GTGCGAGAAGCC-CGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCC 147395 | ||||| || ||| || | | | ||| || || || |||| | ||||||||||| Sbjct 2296 TAGTGCGTGAGGCCGCGGCTG-TCGAGGAAGGCGCGGCTGCCGTTGTCGTCCCAGATGTG 2238 Query 147396 CACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTC 147455 | |||||| | | |||| ||| | || || || || | |||||||| ||||| Sbjct 2237 GATGCCCTTGTCCGCGAGCAGCTTCGCGTTGGTCTCCCCGCGCAGGAACCAGATGAGCTC 2178 Query 147456 CTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAACTGGT 147508 |||| | || || | ||| ||||| | ||| || || || || || | ||||| Sbjct 2177 CTCCGACACGCCGCGCCAGAAGACGCGCTTCGTCGTGAGGAGCGGCAGCTGGT 2125 >seq2683 Length=3852 Score = 212 bits (234), Expect = 7e-50 Identities = 410/593 (69%), Gaps = 14/593 (2%) Strand=Plus/Minus Query 146926 TCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTA 146985 ||||||||||| ||| ||||||||||| ||||| ||||| | | ||||| ||||| Sbjct 2872 TCCACGTGGTTCTTGTACACGTGCGCGTCGCCCAGCGTGTGGATGAGCTCCCCGGGCTTC 2813 Query 146986 AGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGG 147045 || || ||| | | ||| | | | || || | | ||| ||| ||||||||||| Sbjct 2812 AGCCCCGTCGCCTTGGCGATGAGGATAGTCAGGAAGGCGTACGAGGCGATGTTGAAGGGC 2753 Query 147046 ACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCC-CCGT---- 147100 || || ||||||||||| | | |||||||||| ||| |||||| ||| Sbjct 2752 ACACCGAGGCCCATGTCGCAGCTGCGCTGGTACAGCATGCAGCTCAGCTCCTGCGTGTTG 2693 Query 147101 -CGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCC 147159 | |||||| ||||||| |||| ||||||||||||||||||||| | || | Sbjct 2692 GGGTTCACGTAGAACTGGCCGAGGAGGTGGCACGGCGGCAGCGCCATCTTGTCAAGCGCG 2633 Query 147160 GCGGGGTTCCAGGCCGAGACCACCAGCCGCCTG-CTCTCGGGGTTCCTCTTAATCTCTTC 147218 || |||||||| |||| || | |||||| | | | || ||| ||| |||| | | || Sbjct 2632 GCCGGGTTCCACGCCGTGAAGAGCAGCCGGCGGTCGCT-GGGATTCGTCTTGAGCGTCTC 2574 Query 147219 GATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTC-CCGCAGTCCACGT 147277 || | | | | | |||||| ||||||| ||| ||||| ||||| | || | || Sbjct 2573 GACGATGCGCTTGATCTGGTCGACGCCCTTGCCGTCGTAG-TTGTCGTTGAAGGACGTGT 2515 Query 147278 ACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTC 147337 | ||| || ||||| | ||||||||||||||| || ||||||||||| | ||| Sbjct 2514 AGTCGGCGCCGAAGTGGCGCCACTGGAAGCCGTAGACGGGCCCCAGGTC-CATCTCTTCG 2456 Query 147338 T-GTGCGAGAAGCC-CGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCC 147395 | ||||| || ||| || | | | ||| || || || |||| | ||||||||||| Sbjct 2455 TAGTGCGTGAGGCCGCGGCTG-TCGAGGAAGGCGCGGCTGCCGTTGTCGTCCCAGATGTG 2397 Query 147396 CACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTC 147455 | |||||| | | |||| ||| | || || || || | |||||||| ||||| Sbjct 2396 GATGCCCTTGTCCGCGAGCAGCTTCGCGTTGGTCTCCCCGCGCAGGAACCAGATGAGCTC 2337 Query 147456 CTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAACTGGT 147508 |||| | || || | ||| ||||| | ||| || || || || || | ||||| Sbjct 2336 CTCCGACACGCCGCGCCAGAAGACGCGCTTCGTCGTGAGGAGCGGCAGCTGGT 2284 >seq716 Length=1183 Score = 212 bits (234), Expect = 7e-50 Identities = 410/593 (69%), Gaps = 14/593 (2%) Strand=Plus/Minus Query 146926 TCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTA 146985 ||||||||||| ||| ||||||||||| ||||| ||||| | | ||||| ||||| Sbjct 917 TCCACGTGGTTCTTGTACACGTGCGCGTCGCCCAGCGTGTGGATGAGCTCCCCGGGCTTC 858 Query 146986 AGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGG 147045 || || ||| | | ||| | | | || || | | ||| ||| ||||||||||| Sbjct 857 AGCCCCGTCGCCTTGGCGATGAGGATAGTCAGGAAGGCGTACGAGGCGATGTTGAAGGGC 798 Query 147046 ACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCC-CCGT---- 147100 || || ||||||||||| | | |||||||||| ||| |||||| ||| Sbjct 797 ACACCGAGGCCCATGTCGCAGCTGCGCTGGTACAGCATGCAGCTCAGCTCCTGCGTGTTG 738 Query 147101 -CGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCC 147159 | |||||| ||||||| |||| ||||||||||||||||||||| | || | Sbjct 737 GGGTTCACGTAGAACTGGCCGAGGAGGTGGCACGGCGGCAGCGCCATCTTGTCAAGCGCG 678 Query 147160 GCGGGGTTCCAGGCCGAGACCACCAGCCGCCTG-CTCTCGGGGTTCCTCTTAATCTCTTC 147218 || |||||||| |||| || | |||||| | | | || ||| ||| |||| | | || Sbjct 677 GCCGGGTTCCACGCCGTGAAGAGCAGCCGGCGGTCGCT-GGGATTCGTCTTGAGCGTCTC 619 Query 147219 GATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTC-CCGCAGTCCACGT 147277 || | | | | | |||||| ||||||| ||| ||||| ||||| | || | || Sbjct 618 GACGATGCGCTTGATCTGGTCGACGCCCTTGCCGTCGTAG-TTGTCGTTGAAGGACGTGT 560 Query 147278 ACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTC 147337 | ||| || ||||| | ||||||||||||||| || ||||||||||| | ||| Sbjct 559 AGTCGGCGCCGAAGTGGCGCCACTGGAAGCCGTAGACGGGCCCCAGGTC-CATCTCTTCG 501 Query 147338 T-GTGCGAGAAGCC-CGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCC 147395 | ||||| || ||| || | | | ||| || || || |||| | ||||||||||| Sbjct 500 TAGTGCGTGAGGCCGCGGCTG-TCGAGGAAGGCGCGGCTGCCGTTGTCGTCCCAGATGTG 442 Query 147396 CACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTC 147455 | |||||| | | |||| ||| | || || || || | |||||||| ||||| Sbjct 441 GATGCCCTTGTCCGCGAGCAGCTTCGCGTTGGTCTCCCCGCGCAGGAACCAGATGAGCTC 382 Query 147456 CTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAACTGGT 147508 |||| | || || | ||| ||||| | ||| || || || || || | ||||| Sbjct 381 CTCCGACACGCCGCGCCAGAAGACGCGCTTCGTCGTGAGGAGCGGCAGCTGGT 329 >seq393 Length=3299 Score = 212 bits (234), Expect = 7e-50 Identities = 410/593 (69%), Gaps = 14/593 (2%) Strand=Plus/Minus Query 146926 TCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTA 146985 ||||||||||| ||| ||||||||||| ||||| ||||| | | ||||| ||||| Sbjct 2133 TCCACGTGGTTCTTGTACACGTGCGCGTCGCCCAGCGTGTGGATGAGCTCCCCGGGCTTC 2074 Query 146986 AGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGG 147045 || || ||| | | ||| | | | || || | | ||| ||| ||||||||||| Sbjct 2073 AGCCCCGTCGCCTTGGCGATGAGGATAGTCAGGAAGGCGTACGAGGCGATGTTGAAGGGC 2014 Query 147046 ACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCC-CCGT---- 147100 || || ||||||||||| | | |||||||||| ||| |||||| ||| Sbjct 2013 ACACCGAGGCCCATGTCGCAGCTGCGCTGGTACAGCATGCAGCTCAGCTCCTGCGTGTTG 1954 Query 147101 -CGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCC 147159 | |||||| ||||||| |||| ||||||||||||||||||||| | || | Sbjct 1953 GGGTTCACGTAGAACTGGCCGAGGAGGTGGCACGGCGGCAGCGCCATCTTGTCAAGCGCG 1894 Query 147160 GCGGGGTTCCAGGCCGAGACCACCAGCCGCCTG-CTCTCGGGGTTCCTCTTAATCTCTTC 147218 || |||||||| |||| || | |||||| | | | || ||| ||| |||| | | || Sbjct 1893 GCCGGGTTCCACGCCGTGAAGAGCAGCCGGCGGTCGCT-GGGATTCGTCTTGAGCGTCTC 1835 Query 147219 GATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTC-CCGCAGTCCACGT 147277 || | | | | | |||||| ||||||| ||| ||||| ||||| | || | || Sbjct 1834 GACGATGCGCTTGATCTGGTCGACGCCCTTGCCGTCGTAG-TTGTCGTTGAAGGACGTGT 1776 Query 147278 ACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTC 147337 | ||| || ||||| | ||||||||||||||| || ||||||||||| | ||| Sbjct 1775 AGTCGGCGCCGAAGTGGCGCCACTGGAAGCCGTAGACGGGCCCCAGGTC-CATCTCTTCG 1717 Query 147338 T-GTGCGAGAAGCC-CGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCC 147395 | ||||| || ||| || | | | ||| || || || |||| | ||||||||||| Sbjct 1716 TAGTGCGTGAGGCCGCGGCTG-TCGAGGAAGGCGCGGCTGCCGTTGTCGTCCCAGATGTG 1658 Query 147396 CACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTC 147455 | |||||| | | |||| ||| | || || || || | |||||||| ||||| Sbjct 1657 GATGCCCTTGTCCGCGAGCAGCTTCGCGTTGGTCTCCCCGCGCAGGAACCAGATGAGCTC 1598 Query 147456 CTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAACTGGT 147508 |||| | || || | ||| ||||| | ||| || || || || || | ||||| Sbjct 1597 CTCCGACACGCCGCGCCAGAAGACGCGCTTCGTCGTGAGGAGCGGCAGCTGGT 1545 >seq6110 Length=999 Score = 120 bits (132), Expect = 4e-22 Identities = 190/270 (70%), Gaps = 7/270 (3%) Strand=Plus/Minus Query 146926 TCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTA 146985 ||||||||||| ||| ||||||||||| ||||| ||||| | | ||||| ||||| Sbjct 285 TCCACGTGGTTCTTGTACACGTGCGCGTCGCCCAGCGTGTGGATGAGCTCCCCGGGCTTC 226 Query 146986 AGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGG 147045 || || ||| | | ||| | | | || || | | ||| ||| ||||||||||| Sbjct 225 AGCCCCGTCGCCTTGGCGATGAGGATAGTCAGGAAGGCGTACGAGGCGATGTTGAAGGGC 166 Query 147046 ACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCC-CCGT---- 147100 || || ||||||||||| | | |||||||||| ||| |||||| ||| Sbjct 165 ACACCGAGGCCCATGTCGCAGCTGCGCTGGTACAGCATGCAGCTCAGCTCCTGCGTGTTG 106 Query 147101 -CGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGC-AGCGCCATGGCGGGCAGGTC 147158 | |||||| ||||||| |||| ||||||||||||| |||||||| | || | Sbjct 105 GGGTTCACGTAGAACTGGCCGAGGAGGTGGCACGGCGGCTAGCGCCATCTTGTCAAGCGC 46 Query 147159 CGCGGGGTTCCAGGCCGAGACCACCAGCCG 147188 || |||||||| |||| || | |||||| Sbjct 45 GGCCGGGTTCCACGCCGTGAAGAGCAGCCG 16 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583394846140800