Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000442495.1_202013-07-31] 12,772 sequences; 27,283,778 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq7561 149 6e-31 seq4920 132 4e-26 seq4861 132 4e-26 seq5572 116 3e-21 >seq7561 Length=2662 Score = 149 bits (164), Expect = 6e-31 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| || | ||| |||||| || |||||||| || || | || || | || || Sbjct 2635 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTACGGCCCTCCTC 2576 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 |||||||||||| ||||| |||| ||||||||||||| ||| | || |||||||||| Sbjct 2575 CAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG 2516 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||||| | | | ||||||||||| |||||||||| | |||||| || Sbjct 2515 GATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGGGCGATCGTCTT 2456 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| || |||||||| |||||||| Sbjct 2455 GCCGGTCAGCGTCTTCACAAAGATCTGCAT 2426 >seq4920 Length=845 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 || ||||| || | ||| |||||| || |||||||| || || | || || | || Sbjct 546 CAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTC 605 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 || |||||||| || ||||| |||| ||||||||||||| ||| | || ||||||||| Sbjct 606 CTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTC 665 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 | |||||| ||||| | | | ||||||||||| |||||||||| | |||||| Sbjct 666 CTGGATCTTCGCCTTCACGCTCTCGATCGTGTCGCTCGCCTCCACCTCCAGGGCGATCGT 725 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || |||| || ||||| || || ||||| Sbjct 726 CTTGCCGGTCAGCGTCTTCACGAAGATTTGCAT 758 >seq4861 Length=995 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 || ||||| || | ||| |||||| || |||||||| || || | || || | || Sbjct 444 CAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTC 385 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 || |||||||| || ||||| |||| ||||||||||||| ||| | || ||||||||| Sbjct 384 CTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTC 325 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 | |||||| ||||| | | | ||||||||||| |||||||||| | |||||| Sbjct 324 CTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGGGCGATCGT 265 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || |||| || ||||| || || ||||| Sbjct 264 CTTGCCGGTCAGCGTCTTCACGAAGATTTGCAT 232 >seq5572 Length=1533 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| || || | || || | || || |||||||| || || || Sbjct 843 CTCCTTCTGAATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCGAGCTGCTTGCCAGCGAA 784 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||||| || | || |||||||||| |||||| ||||| | Sbjct 783 GATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTT 724 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||||| || ||||| | | |||||| || || |||| ||| ||||| Sbjct 723 CTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATCGTCTTGCCGGTCAGAGTCTTCAC 664 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 663 GAAGATCTGCAT 652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450721630801760